RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 LRRN2O75325 713 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 C6orf222P0C671 652 aaPredicted RBP10.24□□□□□ -0.77
LSM1-202ENST00000520286 BMP3P12645 472 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 POU3F3P20264 500 aaPredicted RBP10.24□□□□□ -0.77
LSM1-202ENST00000520286 MAP4P27816 1152 aaKnown RBP10.24□□□□□ -0.77
LSM1-202ENST00000520286 SF1Q15637 639 aaKnown RBP10.24□□□□□ -0.77
LSM1-202ENST00000520286 TREML4Q6UXN2 200 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 LRRTM3Q86VH5 581 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 PRPF38AQ8NAV1 312 aaKnown RBP10.24□□□□□ -0.77
LSM1-202ENST00000520286 KCTD13Q8WZ19 329 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 MYRFLQ96LU7 910 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 HOMER2Q9NSB8 354 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 GFOD1Q9NXC2 390 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 PRR13Q9NZ81 148 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 NDOR1Q9UHB4 597 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 MAPRE3Q9UPY8 281 aa10.24□□□□□ -0.77
LSM1-202ENST00000520286 EOMESO95936 686 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 CDKN1CP49918 316 aaPredicted RBP10.23□□□□□ -0.77
LSM1-202ENST00000520286 GABREP78334 506 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 NFKB2Q00653 900 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 GRB10Q13322 594 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 FERMT3Q86UX7 667 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 UTP4Q969X6 686 aaKnown RBP10.23□□□□□ -0.77
LSM1-202ENST00000520286 ZNF775Q96BV0 537 aaPredicted RBP10.23□□□□□ -0.77
LSM1-202ENST00000520286 DSCC1Q9BVC3 393 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 NKX2-4Q9H2Z4 354 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 C1GALT1Q9NS00 363 aa10.23□□□□□ -0.77
LSM1-202ENST00000520286 FAM95CA0A1B0GW59 222 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 HOXC12P31275 282 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 KCNJ6P48051 423 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 GFRA1P56159 465 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 EVA1CP58658 441 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 SLC7A14Q8TBB6 771 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 CCDC140Q96MF4 163 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 ZDHHC15Q96MV8 337 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 DUSP23Q9BVJ7 150 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 SLC52A2Q9HAB3 445 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 TRIM39Q9HCM9 518 aa10.22□□□□□ -0.77
LSM1-202ENST00000520286 SF3B6Q9Y3B4 125 aaKnown RBP10.22□□□□□ -0.77
LSM1-202ENST00000520286 BLACEA4D250 179 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 RBAK-RBAKDNI3L0D1 243 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 DNAJC8O75937 253 aaPredicted RBP10.21□□□□□ -0.77
LSM1-202ENST00000520286 S100BP04271 92 aaPredicted RBP10.21□□□□□ -0.77
LSM1-202ENST00000520286 SNRPB2P08579 225 aaKnown RBP10.21□□□□□ -0.77
LSM1-202ENST00000520286 MAP4K2Q12851 820 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 NFKBIBQ15653 356 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 TMC3Q7Z5M5 1100 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 DDX42Q86XP3 938 aaKnown RBP eCLIP10.21□□□□□ -0.77
LSM1-202ENST00000520286 FAM20CQ8IXL6 584 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 COX4I2Q96KJ9 171 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 MCM8Q9UJA3 840 aa10.21□□□□□ -0.77
LSM1-202ENST00000520286 CNTNAP4Q9C0A0 1308 aa10.21□□□□□ -0.78
LSM1-202ENST00000520286 EFCAB14O75071 495 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 VAMP4O75379 141 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 AMPD2Q01433 879 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 GPAT2Q6NUI2 795 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 BRAPQ7Z569 592 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 DZIP1LQ8IYY4 767 aaKnown RBP10.2□□□□□ -0.78
LSM1-202ENST00000520286 ARMC10Q8N2F6 343 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 GSTCDQ8NEC7 633 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 GIMAP7Q8NHV1 300 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 DDX1Q92499 740 aaKnown RBP10.2□□□□□ -0.78
LSM1-202ENST00000520286 KCNF1Q9H3M0 494 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 KCNH3Q9ULD8 1083 aa10.2□□□□□ -0.78
LSM1-202ENST00000520286 GPR55Q9Y2T6 319 aaPredicted RBP10.2□□□□□ -0.78
LSM1-202ENST00000520286 SIGLEC6O43699 453 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 LEFTY1O75610 366 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 ADGRE1Q14246 886 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 MBTPS1Q14703 1052 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 SFRP5Q5T4F7 317 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 PAOXQ6QHF9 649 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 NOL8Q76FK4 1167 aaKnown RBP10.19□□□□□ -0.78
LSM1-202ENST00000520286 PPM1KQ8N3J5 372 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 DTWD2Q8NBA8 298 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 TMEM145Q8NBT3 493 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 PTPRN2Q92932 1015 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 PRDM5Q9NQX1 630 aaPredicted RBP10.19□□□□□ -0.78
LSM1-202ENST00000520286 CYP26B1Q9NR63 512 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 CHST7Q9NS84 486 aa10.19□□□□□ -0.78
LSM1-202ENST00000520286 PARNO95453 639 aaKnown RBP10.18□□□□□ -0.78
LSM1-202ENST00000520286 CPP00450 1065 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 SCG5P05408 212 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 ITIH2P19823 946 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 COL8A1P27658 744 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 ECI1P42126 302 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 NTRK3Q16288 839 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 FGD2Q7Z6J4 655 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 AHI1Q8N157 1196 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 MEGF10Q96KG7 1140 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 Q96M66 194 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 CEP89Q96ST8 783 aa10.18□□□□□ -0.78
LSM1-202ENST00000520286 ASCC2Q9H1I8 757 aaPredicted RBP10.18□□□□□ -0.78
LSM1-202ENST00000520286 G3BP2Q9UN86 482 aaKnown RBP10.18□□□□□ -0.78
LSM1-202ENST00000520286 TNPO3Q9Y5L0 923 aaKnown RBP10.18□□□□□ -0.78
LSM1-202ENST00000520286 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.17□□□□□ -0.78
LSM1-202ENST00000520286 H0Y8X5 98 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 MEIS1O00470 390 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 PRAMEF1O95521 474 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 CBX7O95931 251 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 FAM87AP0C7U9 286 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms