RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MYH8P13535 1937 aa24.51■■□□□ 1.51
SQSTM1-215ENST00000514093 MOXD2PA6NHM9 499 aa24.5■■□□□ 1.51
SQSTM1-215ENST00000514093 APBB1O00213 710 aa24.5■■□□□ 1.51
SQSTM1-215ENST00000514093 CSF2RAP15509 400 aa24.5■■□□□ 1.51
SQSTM1-215ENST00000514093 SLC4A3P48751 1232 aa24.5■■□□□ 1.51
SQSTM1-215ENST00000514093 PPIGQ13427 754 aaKnown RBP eCLIP24.5■■□□□ 1.519e-12■■□□□ 13.5
SQSTM1-215ENST00000514093 C12orf60Q5U649 245 aa24.5■■□□□ 1.51
SQSTM1-215ENST00000514093 VTI1AQ96AJ9 217 aa24.5■■□□□ 1.51
SQSTM1-215ENST00000514093 USP17L12C9JPN9 530 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 USP17L21D6R901 530 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 CHGBP05060 677 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 RHPN1Q8TCX5 695 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 DDX11Q96FC9 970 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 GLT1D1Q96MS3 346 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 NUP88Q99567 741 aaPredicted RBP24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 PPP1R12CQ9BZL4 782 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 RIPK3Q9Y572 518 aa24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 BAZ2AQ9UIF9 1905 aaKnown RBP24.49■■□□□ 1.51
SQSTM1-215ENST00000514093 C6orf222P0C671 652 aaPredicted RBP24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 CDK7P50613 346 aa24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 ADGRE1Q14246 886 aa24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 ZNF365Q70YC5 407 aa24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 ATXN2LQ8WWM7 1075 aaKnown RBP24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 ASB2Q96Q27 587 aa24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 KANSL2Q9H9L4 492 aa24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 GOPCQ9HD26 462 aa24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 ATP8A2Q9NTI2 1148 aa24.48■■□□□ 1.51
SQSTM1-215ENST00000514093 SYNGAP1Q96PV0 1343 aa24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 ADCY6O43306 1168 aa24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 DUSP11O75319 330 aaKnown RBP24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 ASGR1P07306 291 aa24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 COPB2P35606 906 aa24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 RASIP1Q5U651 963 aa24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 SNRNP48Q6IEG0 339 aaKnown RBP24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 C16orf86Q6ZW13 317 aa24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 THEGQ9P2T0 379 aa24.47■■□□□ 1.51
SQSTM1-215ENST00000514093 ELP1O95163 1332 aa24.46■■□□□ 1.51
SQSTM1-215ENST00000514093 IGFBP4P22692 258 aa24.46■■□□□ 1.51
SQSTM1-215ENST00000514093 ADD2P35612 726 aa24.46■■□□□ 1.51
SQSTM1-215ENST00000514093 AKNAD1Q5T1N1 836 aa24.46■■□□□ 1.51
SQSTM1-215ENST00000514093 ADAMTS19Q8TE59 1207 aa24.46■■□□□ 1.51
SQSTM1-215ENST00000514093 MROH7Q68CQ1 1323 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 ACVR2BQ13705 512 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 CCDC174Q6PII3 467 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 MAMDC4Q6UXC1 1216 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 AMOTL1Q8IY63 956 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 TMEM199Q8N511 208 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 MSL3Q8N5Y2 521 aaKnown RBP24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 SLF1Q9BQI6 1058 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 TEX13BQ9BXU2 312 aa24.45■■□□□ 1.5
SQSTM1-215ENST00000514093 DNAJC25-GNG10A0A024R161 153 aa24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 ARVCFO00192 962 aa24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 IFIT2P09913 472 aaKnown RBP24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 GNASQ5JWF2 1037 aa24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 CPXCR1Q8N123 301 aa24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 STK11IPQ8N1F8 1099 aa24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 CLASRPQ8N2M8 674 aaKnown RBP24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 PCSK9Q8NBP7 692 aaKnown RBP24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 BOLA2Q9H3K6 86 aa24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 PAG1Q9NWQ8 432 aa24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 CXXC1Q9P0U4 656 aaPredicted RBP24.44■■□□□ 1.5
SQSTM1-215ENST00000514093 CHD9Q3L8U1 2897 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 A0A0U1RQG5 324 aaPredicted RBP24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 CST5P28325 142 aaPredicted RBP24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 CYP2C18P33260 490 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 MRPS5P82675 430 aaKnown RBP24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 CCDC144BQ3MJ40 725 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 CTR9Q6PD62 1173 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 FAM126BQ8IXS8 530 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 NKX2-4Q9H2Z4 354 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 SLC4A4Q9Y6R1 1079 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 MYO9BQ13459 2157 aa24.43■■□□□ 1.5
SQSTM1-215ENST00000514093 HSP90AB4PQ58FF6 505 aa24.42■■□□□ 1.5
SQSTM1-215ENST00000514093 PSRC1Q6PGN9 363 aaPredicted RBP24.42■■□□□ 1.5
SQSTM1-215ENST00000514093 UHRF1Q96T88 793 aaPredicted RBP24.42■■□□□ 1.5
SQSTM1-215ENST00000514093 SPC25Q9HBM1 224 aa24.42■■□□□ 1.5
SQSTM1-215ENST00000514093 MSRAQ9UJ68 235 aa24.42■■□□□ 1.5
SQSTM1-215ENST00000514093 GJA9P57773 515 aa24.41■■□□□ 1.5
SQSTM1-215ENST00000514093 DDRGK1Q96HY6 314 aa24.41■■□□□ 1.5
SQSTM1-215ENST00000514093 FGD4Q96M96 766 aa24.41■■□□□ 1.5
SQSTM1-215ENST00000514093 RAVER2Q9HCJ3 691 aaKnown RBP24.41■■□□□ 1.5
SQSTM1-215ENST00000514093 F5H6K3 240 aa24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 TLR3O15455 904 aaKnown RBP24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 BEX3Q00994 111 aa24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 KLRC3Q07444 240 aa24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 ANKRD35Q8N283 1001 aa24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 UPF3AQ9H1J1 476 aaKnown RBP24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 ABHD16BQ9H3Z7 469 aa24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 IL23AQ9NPF7 189 aa24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 YBX2Q9Y2T7 364 aaKnown RBP24.4■■□□□ 1.5
SQSTM1-215ENST00000514093 CTAGE5O15320 804 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 NDUFB10O96000 172 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 RAB30Q15771 203 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 ARMCX2Q7L311 632 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 ZNF467Q7Z7K2 595 aaPredicted RBP24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 PRPF38AQ8NAV1 312 aaKnown RBP24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 PANK1Q8TE04 598 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms