RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 COA7Q96BR5 231 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 TMEM87BQ96K49 555 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 SENP2Q9HC62 589 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 GPHNQ9NQX3 736 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 NAP1L2Q9ULW6 460 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 CNMDO75829 334 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 CPA1P15085 419 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 CASTP20810 708 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 SNAP25P60880 206 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 CCDC174Q6PII3 467 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 LBX2Q6XYB7 198 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 DHX32Q7L7V1 743 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 OTOP1Q7RTM1 612 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 NCAPG2Q86XI2 1143 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 TRIM47Q96LD4 638 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 ZSWIM8A7E2V4 1837 aa13.35□□□□□ -0.27
LIMCH1-210ENST00000509454 SH2B2O14492 632 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 MAPK4P31152 587 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 ZNF543Q08ER8 600 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 COL9A3Q14050 684 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 TMEM132BQ14DG7 1078 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 C8orf34Q49A92 452 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 SYDE2Q5VT97 1194 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 POTEEQ6S8J3 1075 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 SYNE3Q6ZMZ3 975 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 TNS4Q8IZW8 715 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 IGDCC4Q8TDY8 1250 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 KCNB2Q92953 911 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 SPATC1LQ9H0A9 340 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 LY9Q9HBG7 655 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 IVNS1ABPQ9Y6Y0 642 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 SEC24BO95487 1268 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 GNRH1P01148 92 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 CTGFP29279 349 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 STAT3P40763 770 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 CAP1Q01518 475 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 ASPRV1Q53RT3 343 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 GPATCH4Q5T3I0 446 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 SNRNP48Q6IEG0 339 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 RAB11FIP4Q86YS3 637 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 ZNF654Q8IZM8 581 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 TMTC2Q8N394 836 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 RAET1EQ8TD07 263 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 MTA3Q9BTC8 594 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 MYL10Q9BUA6 226 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 MOV10L1Q9BXT6 1211 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 MCOLN1Q9GZU1 580 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 UBA5Q9GZZ9 404 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 PORCNQ9H237 461 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 RAVER2Q9HCJ3 691 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 PRR12Q9ULL5 1215 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 SLC12A7Q9Y666 1083 aa13.34□□□□□ -0.27
LIMCH1-210ENST00000509454 MGAMO43451 1857 aa13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 PARP14Q460N5 1801 aa13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 RLFQ13129 1914 aa13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 PKN2Q16513 984 aaKnown RBP13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 PLEKHH3Q7Z736 793 aa13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 CTCFLQ8NI51 663 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 CPVLQ9H3G5 476 aa13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 VAT1LQ9HCJ6 419 aa13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 CYP46A1Q9Y6A2 500 aa13.33□□□□□ -0.28
LIMCH1-210ENST00000509454 COL11A1P12107 1806 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 WDR19Q8NEZ3 1342 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 PLA2G6O60733 806 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 SNHG28P0DPA3 235 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 FDX1P10109 184 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 ERCC3P19447 782 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 RPS6KB1P23443 525 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 EXOSC10Q01780 885 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 PRKCZQ05513 592 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 GRM4Q14833 912 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 Q6ZUG5 572 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 GPR142Q7Z601 462 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 CCDC144CPQ8IYA2 1237 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 TEX13BQ9BXU2 312 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 UPF2Q9HAU5 1272 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 SLC38A10Q9HBR0 1119 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 HOMER2Q9NSB8 354 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 SRRDQ9UH36 339 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 ADAMTS5Q9UNA0 930 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 PTPN22Q9Y2R2 807 aa13.32□□□□□ -0.28
LIMCH1-210ENST00000509454 A0A0G2JMZ2 1700 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 KLRF2D3W0D1 207 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 DDAH1O94760 285 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 SLC25A27O95847 323 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 RXRAP19793 462 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 LIFRP42702 1097 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 FBXO46Q6PJ61 603 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 BTNL9Q6UXG8 535 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 MICU3Q86XE3 530 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 STAG2Q8N3U4 1231 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 NUDT12Q9BQG2 462 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 UPF3BQ9BZI7 483 aaKnown RBP13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 MROH8Q9H579 483 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 BIN2Q9UBW5 565 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 CCPG1Q9ULG6 757 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 GABRQQ9UN88 632 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 PTCH2Q9Y6C5 1203 aa13.31□□□□□ -0.28
LIMCH1-210ENST00000509454 KLF18A0A0U1RQI7 1052 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 CALM1P0DP23 149 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms