RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KLRC3Q07444 240 aa25.08■■□□□ 1.61
SQSTM1-210ENST00000506042 ZNF467Q7Z7K2 595 aaPredicted RBP25.08■■□□□ 1.61
SQSTM1-210ENST00000506042 ANKRD35Q8N283 1001 aa25.08■■□□□ 1.61
SQSTM1-210ENST00000506042 PCSK9Q8NBP7 692 aaKnown RBP25.08■■□□□ 1.61
SQSTM1-210ENST00000506042 STARD7Q9NQZ5 370 aa25.08■■□□□ 1.61
SQSTM1-210ENST00000506042 FEM1BQ9UK73 627 aa25.08■■□□□ 1.61
SQSTM1-210ENST00000506042 TMEM265A0A087WTH1 108 aa25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 ATP2A1O14983 1001 aa25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 RNF113AO15541 343 aaKnown RBP25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 OAZ1P54368 228 aa25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 SHHQ15465 462 aa25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 GLT1D1Q96MS3 346 aa25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 TMEM39AQ9NV64 488 aa25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 CLIP2Q9UDT6 1046 aa25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 ISY1Q9ULR0 285 aaKnown RBP25.07■■□□□ 1.6
SQSTM1-210ENST00000506042 A0A1W2PQ45 241 aaPredicted RBP25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 A0A1W2PQY0 241 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 TTLL1O95922 423 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 PGK1P00558 417 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 RASA1P20936 1047 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 SLC4A3P48751 1232 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 CHST13Q8NET6 341 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 RNPC3Q96LT9 517 aaKnown RBP25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 FAM161BQ96MY7 647 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 TOX2Q96NM4 488 aa25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 ZHX1Q9UKY1 873 aaPredicted RBP25.06■■□□□ 1.6
SQSTM1-210ENST00000506042 PQBP1O60828 265 aaKnown RBP25.05■■□□□ 1.6
SQSTM1-210ENST00000506042 TSPY3P0CV98 308 aa25.05■■□□□ 1.6
SQSTM1-210ENST00000506042 TSPY8P0CW00 308 aa25.05■■□□□ 1.6
SQSTM1-210ENST00000506042 FPGSQ05932 587 aa25.05■■□□□ 1.6
SQSTM1-210ENST00000506042 SLFNL1Q499Z3 407 aa25.05■■□□□ 1.6
SQSTM1-210ENST00000506042 CPXCR1Q8N123 301 aa25.05■■□□□ 1.6
SQSTM1-210ENST00000506042 ABHD16BQ9H3Z7 469 aa25.05■■□□□ 1.6
SQSTM1-210ENST00000506042 GSG1L2A8MUP6 293 aa25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 GPAA1O43292 621 aa25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 DUSP11O75319 330 aaKnown RBP25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 NDUFB10O96000 172 aa25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 ACLYP53396 1101 aa25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 IKQ13123 557 aaPredicted RBP25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 MAMDC4Q6UXC1 1216 aa25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 KIFC2Q96AC6 838 aa25.04■■□□□ 1.6
SQSTM1-210ENST00000506042 KIAA0355O15063 1070 aa25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 TLR3O15455 904 aaKnown RBP25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 ZNF865P0CJ78 1059 aaPredicted RBP25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 STK11IPQ8N1F8 1099 aa25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 REPS2Q8NFH8 660 aa25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 CHURC1Q8WUH1 139 aa25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 VTI1AQ96AJ9 217 aa25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 TTC41PQ6P2S7 1318 aa25.03■■□□□ 1.6
SQSTM1-210ENST00000506042 GREB1LQ9C091 1923 aaPredicted RBP25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 MYH4Q9Y623 1939 aa25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 PATL2C9JE40 543 aaKnown RBP25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 SMARCA5O60264 1052 aaPredicted RBP25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 GMCL1P1Q8NEA9 526 aa25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 GUCD1Q96NT3 240 aa25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 NAPBQ9H115 298 aa25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 ELP1O95163 1332 aa25.02■■□□□ 1.6
SQSTM1-210ENST00000506042 TRIM43BA6NCK2 446 aa25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 C6orf222P0C671 652 aaPredicted RBP25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 STAT2P52630 851 aa25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 ANKRD33Q7Z3H0 272 aa25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 FAM160B2Q86V87 743 aa25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 MKL1Q969V6 931 aa25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 TRIM43Q96BQ3 446 aaPredicted RBP25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 NUP88Q99567 741 aaPredicted RBP25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 SYNRGQ9UMZ2 1314 aa25.01■■□□□ 1.59
SQSTM1-210ENST00000506042 LAMA3Q16787 3333 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 ADAMTS4O75173 837 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 BMP3P12645 472 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 ACVR2BQ13705 512 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 C9orf50Q5SZB4 431 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 SEMA6BQ9H3T3 888 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 DCTPP1Q9H773 170 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 SLC38A10Q9HBR0 1119 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 MTMR4Q9NYA4 1195 aa25■■□□□ 1.59
SQSTM1-210ENST00000506042 DNAJC25-GNG10A0A024R161 153 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 SMCHD1A6NHR9 2005 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 CST5P28325 142 aaPredicted RBP24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 TKFCQ3LXA3 575 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 SH3RF1Q7Z6J0 888 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 MAFAQ8NHW3 353 aaPredicted RBP24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 OSBP2Q969R2 916 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 CEP95Q96GE4 821 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 CDX2Q99626 313 aaPredicted RBP24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 SEZ6LQ9BYH1 1024 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 MTIF3Q9H2K0 278 aaKnown RBP24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 ACAD9Q9H845 621 aa24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.99■■□□□ 1.59
SQSTM1-210ENST00000506042 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 ASB14A6NK59 587 aa24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 FOSL2P15408 326 aa24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 TAL1P17542 331 aaPredicted RBP24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 PPIGQ13427 754 aaKnown RBP eCLIP24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 KCNA10Q16322 511 aa24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 SLFN13Q68D06 897 aa24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 IFNL3Q8IZI9 196 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms