RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 SNRNP48Q6IEG0 339 aaKnown RBP21.29■■□□□ 1
SQSTM1-209ENST00000504627 TICAM2Q86XR7 235 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 GMCL1P1Q8NEA9 526 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 TRPV1Q8NER1 839 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 REPS2Q8NFH8 660 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 FAM227BQ96M60 508 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 FEM1BQ9UK73 627 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 STX8Q9UNK0 236 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 PARP14Q460N5 1801 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 PFASO15067 1338 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 FOXP2O15409 715 aa21.28■■□□□ 1
SQSTM1-209ENST00000504627 BMP3P12645 472 aa21.28■■□□□ 1
SQSTM1-209ENST00000504627 FXR1P51114 621 aaKnown RBP eCLIP21.28■■□□□ 14e-6■□□□□ 9.8
SQSTM1-209ENST00000504627 CPXCR1Q8N123 301 aa21.28■■□□□ 1
SQSTM1-209ENST00000504627 BACH2Q9BYV9 841 aa21.28■■□□□ 1
SQSTM1-209ENST00000504627 TOMM22Q9NS69 142 aa21.28■■□□□ 1
SQSTM1-209ENST00000504627 ZMYND8Q9ULU4 1186 aaPredicted RBP21.28■■□□□ 1
SQSTM1-209ENST00000504627 TRIOBPQ9H2D6 2365 aa21.28■■□□□ 1
SQSTM1-209ENST00000504627 COL11A1P12107 1806 aaPredicted RBP21.27■■□□□ 1
SQSTM1-209ENST00000504627 A0A0D9SFI3 127 aa21.27■■□□□ 1
SQSTM1-209ENST00000504627 RANBP6O60518 1105 aaKnown RBP21.27■■□□□ 1
SQSTM1-209ENST00000504627 IGHA2P01877 340 aa21.27■■□□□ 1
SQSTM1-209ENST00000504627 COL6A1P12109 1028 aa21.27■■□□□ 1
SQSTM1-209ENST00000504627 IKQ13123 557 aaPredicted RBP21.27■■□□□ 1
SQSTM1-209ENST00000504627 NMIQ13287 307 aaPredicted RBP21.27■■□□□ 1
SQSTM1-209ENST00000504627 SENP6Q9GZR1 1112 aaPredicted RBP21.27■■□□□ 1
SQSTM1-209ENST00000504627 INCENPQ9NQS7 918 aa21.27■■□□□ 1
SQSTM1-209ENST00000504627 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.27■■□□□ 15e-7■■■□□ 16.2
SQSTM1-209ENST00000504627 MYH4Q9Y623 1939 aa21.27■■□□□ 1
SQSTM1-209ENST00000504627 SEPT4O43236 478 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 MYCNP04198 464 aaPredicted RBP21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 ALX1Q15699 326 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 PRAMEF19Q5SWL8 479 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 ANO1Q5XXA6 986 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 ARRDC4Q8NCT1 418 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 CHMP4CQ96CF2 233 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 DDX11Q96FC9 970 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 RAVER2Q9HCJ3 691 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 ANAPC4Q9UJX5 808 aa21.26■□□□□ 0.99
SQSTM1-209ENST00000504627 TMEM232C9JQI7 657 aa21.25■□□□□ 0.99
SQSTM1-209ENST00000504627 FGAP02671 866 aa21.25■□□□□ 0.99
SQSTM1-209ENST00000504627 SYN1P17600 705 aa21.25■□□□□ 0.99
SQSTM1-209ENST00000504627 SLC1A4P43007 532 aa21.25■□□□□ 0.99
SQSTM1-209ENST00000504627 SLC38A10Q9HBR0 1119 aa21.25■□□□□ 0.99
SQSTM1-209ENST00000504627 DIS3Q9Y2L1 958 aaKnown RBP21.25■□□□□ 0.99
SQSTM1-209ENST00000504627 DNM1LO00429 736 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 ATP2A1O14983 1001 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 EIF5BO60841 1220 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 HSPD1P10809 573 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 MCCP23508 829 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 STAT2P52630 851 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 MFAP1P55081 439 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 ZNF792Q3KQV3 632 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 RRP12Q5JTH9 1297 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 GJC2Q5T442 439 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 CASC1Q6TDU7 716 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 CHURC1Q8WUH1 139 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 TINF2Q9BSI4 451 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 RIPK3Q9Y572 518 aa21.24■□□□□ 0.99
SQSTM1-209ENST00000504627 ALPK3Q96L96 1907 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 KBTBD13C9JR72 458 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 NMT2O60551 498 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 FDX1P10109 184 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 LRRC26Q2I0M4 334 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 ZNF589Q86UQ0 364 aaPredicted RBP21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 FAM160B2Q86V87 743 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 GMCL1Q96IK5 515 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 PRO3102Q9H379 93 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 NRBP1Q9UHY1 535 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 CCDC171Q6TFL3 1326 aa21.23■□□□□ 0.99
SQSTM1-209ENST00000504627 ZNFX1Q9P2E3 1918 aaKnown RBP21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 ORC4O43929 436 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 ATN1P54259 1190 aaPredicted RBP21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 OAZ1P54368 228 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 ANKRD35Q8N283 1001 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 STAG1Q8WVM7 1258 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 IL17RBQ9NRM6 502 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 PCDH10Q9P2E7 1040 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 FBXO40Q9UH90 709 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 MTMR7Q9Y216 660 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 CNPY2Q9Y2B0 182 aa21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 RANBP2P49792 3224 aaKnown RBP21.22■□□□□ 0.99
SQSTM1-209ENST00000504627 A0A1W2PPC1 479 aa21.21■□□□□ 0.99
SQSTM1-209ENST00000504627 HAND2P61296 217 aa21.21■□□□□ 0.99
SQSTM1-209ENST00000504627 CHST13Q8NET6 341 aa21.21■□□□□ 0.99
SQSTM1-209ENST00000504627 HOMER2Q9NSB8 354 aa21.21■□□□□ 0.99
SQSTM1-209ENST00000504627 DIAPH3Q9NSV4 1193 aa21.21■□□□□ 0.99
SQSTM1-209ENST00000504627 TACC3Q9Y6A5 838 aa21.21■□□□□ 0.99
SQSTM1-209ENST00000504627 FRMPD3Q5JV73 1810 aa21.2■□□□□ 0.98
SQSTM1-209ENST00000504627 HIP1O00291 1037 aa21.2■□□□□ 0.98
SQSTM1-209ENST00000504627 RARBP10826 455 aa21.2■□□□□ 0.98
SQSTM1-209ENST00000504627 RCSD1Q6JBY9 416 aa21.2■□□□□ 0.98
SQSTM1-209ENST00000504627 KCTD1Q719H9 257 aa21.2■□□□□ 0.98
SQSTM1-209ENST00000504627 ZMYM6O95789 1325 aa21.2■□□□□ 0.98
SQSTM1-209ENST00000504627 FGRP09769 529 aa21.19■□□□□ 0.98
SQSTM1-209ENST00000504627 CCDC96Q2M329 555 aa21.19■□□□□ 0.98
SQSTM1-209ENST00000504627 CWC27Q6UX04 472 aaKnown RBP21.19■□□□□ 0.98
SQSTM1-209ENST00000504627 MFSD6Q6ZSS7 791 aa21.19■□□□□ 0.98
SQSTM1-209ENST00000504627 MSL3Q8N5Y2 521 aaKnown RBP21.19■□□□□ 0.98
SQSTM1-209ENST00000504627 GDF15Q99988 308 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms