RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 FOXN1O15353 648 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 MCM7P33993 719 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 LARGE2Q8N3Y3 721 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 AOPEPQ8N6M6 819 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 ZNF713Q8N859 430 aaPredicted RBP24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 EPSTI1Q96J88 318 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 VAT1LQ9HCJ6 419 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 FAM196BA6NMK8 535 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 CERKLQ49MI3 558 aaPredicted RBP24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 ARL6IP4Q66PJ3 421 aaKnown RBP24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 ZSCAN29Q8IWY8 852 aaPredicted RBP24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 SYMPKQ92797 1274 aaKnown RBP24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 MKL1Q969V6 931 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 TRIM5Q9C035 493 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 PCDHA5Q9Y5H7 936 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 A0A087X0B3 334 aa24.33■■□□□ 1.49
UBE2D3-216ENST00000503742 ESYT2A0FGR8 921 aa24.33■■□□□ 1.49
UBE2D3-216ENST00000503742 PSMD14O00487 310 aa24.33■■□□□ 1.49
UBE2D3-216ENST00000503742 POSTNQ15063 836 aa24.33■■□□□ 1.49
UBE2D3-216ENST00000503742 NT5DC1Q5TFE4 455 aa24.33■■□□□ 1.49
UBE2D3-216ENST00000503742 KANK3Q6NY19 840 aa24.33■■□□□ 1.49
UBE2D3-216ENST00000503742 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.33■■□□□ 1.49
UBE2D3-216ENST00000503742 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.33■■□□□ 1.493e-10■□□□□ 10.8
UBE2D3-216ENST00000503742 SMCO2A6NFE2 343 aa24.33■■□□□ 1.48
UBE2D3-216ENST00000503742 GNA11P29992 359 aa24.33■■□□□ 1.48
UBE2D3-216ENST00000503742 IL17AQ16552 155 aa24.33■■□□□ 1.48
UBE2D3-216ENST00000503742 SOGA3Q5TF21 947 aa24.33■■□□□ 1.48
UBE2D3-216ENST00000503742 C6orf50Q9HD87 102 aa24.33■■□□□ 1.48
UBE2D3-216ENST00000503742 NYAP2Q9P242 653 aa24.33■■□□□ 1.48
UBE2D3-216ENST00000503742 VWA3AA6NCI4 1184 aa24.32■■□□□ 1.48
UBE2D3-216ENST00000503742 RAD17O75943 681 aa24.32■■□□□ 1.48
UBE2D3-216ENST00000503742 TGFB2P61812 414 aa24.32■■□□□ 1.48
UBE2D3-216ENST00000503742 GPATCH4Q5T3I0 446 aaKnown RBP24.32■■□□□ 1.48
UBE2D3-216ENST00000503742 PDILTQ8N807 584 aa24.32■■□□□ 1.48
UBE2D3-216ENST00000503742 KANSL2Q9H9L4 492 aa24.32■■□□□ 1.48
UBE2D3-216ENST00000503742 GPCPD1Q9NPB8 672 aa24.32■■□□□ 1.48
UBE2D3-216ENST00000503742 SPDYE2BA6NHP3 402 aa24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 SPDYE6P0CI01 402 aa24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 SARSP49591 514 aaKnown RBP24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 ZNF500O60304 480 aaPredicted RBP24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 INF2Q27J81 1249 aa24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 SHROOM1Q2M3G4 852 aaPredicted RBP24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 KRT25Q7Z3Z0 450 aa24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 JMJD4Q9H9V9 463 aa24.31■■□□□ 1.48
UBE2D3-216ENST00000503742 PRR29P0C7W0 189 aa24.3■■□□□ 1.48
UBE2D3-216ENST00000503742 CDC25BP30305 580 aa24.3■■□□□ 1.48
UBE2D3-216ENST00000503742 NCAPHQ15003 741 aa24.3■■□□□ 1.48
UBE2D3-216ENST00000503742 ISM2Q6H9L7 571 aa24.3■■□□□ 1.48
UBE2D3-216ENST00000503742 TRIM34Q9BYJ4 488 aa24.3■■□□□ 1.48
UBE2D3-216ENST00000503742 PIM2Q9P1W9 311 aa24.3■■□□□ 1.48
UBE2D3-216ENST00000503742 SLFN14P0C7P3 912 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 EEF2P13639 858 aaKnown RBP24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 ATP2B2Q01814 1243 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 SH3RF1Q7Z6J0 888 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 CCDC125Q86Z20 511 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 SIAH1Q8IUQ4 282 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 ADGRF4Q8IZF3 695 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 SPC24Q8NBT2 197 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 SPATA20Q8TB22 786 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 MTMR8Q96EF0 704 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 GOLGA6L6A8MZA4 724 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 TTBK2Q6IQ55 1244 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 TMEM179Q6ZVK1 233 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 DHX58Q96C10 678 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 MRFAP1L1Q96HT8 127 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 HDAC9Q9UKV0 1011 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 ZNRF3Q9ULT6 936 aa24.29■■□□□ 1.48
UBE2D3-216ENST00000503742 PNMA6FA0A0J9YX94 578 aa24.28■■□□□ 1.48
UBE2D3-216ENST00000503742 IKBKBO14920 756 aa24.28■■□□□ 1.48
UBE2D3-216ENST00000503742 ZBTB7AO95365 584 aa24.28■■□□□ 1.48
UBE2D3-216ENST00000503742 TPM3P06753 285 aa24.28■■□□□ 1.48
UBE2D3-216ENST00000503742 BMP6P22004 513 aa24.28■■□□□ 1.48
UBE2D3-216ENST00000503742 LONP1P36776 959 aaKnown RBP24.28■■□□□ 1.48
UBE2D3-216ENST00000503742 MAN1B1Q9UKM7 699 aa24.28■■□□□ 1.48
UBE2D3-216ENST00000503742 SMTNL1A8MU46 457 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 SEPT2Q15019 361 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 NONOQ15233 471 aaKnown RBP eCLIP24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 GRAMD1CQ8IYS0 662 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 BRCA1P38398 1863 aaKnown RBP24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 E2F4Q16254 413 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 CCDC96Q2M329 555 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 PPP1R18Q6NYC8 613 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 NIM1KQ8IY84 436 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 DCAF4Q8WV16 495 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 ZNF830Q96NB3 372 aaPredicted RBP24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 TMEM60Q9H2L4 133 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 TMOD2Q9NZR1 351 aa24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 ZBTB12Q9Y330 459 aaPredicted RBP24.27■■□□□ 1.48
UBE2D3-216ENST00000503742 LAD1O00515 517 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 DLGAP5Q15398 846 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 ABCB5Q2M3G0 1257 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 KCTD1Q719H9 257 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 TRIML1Q8N9V2 468 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 AGBL3Q8NEM8 1001 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 SMARCE1Q969G3 411 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 COA7Q96BR5 231 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 CCDC34Q96HJ3 373 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 CSRNP1Q96S65 589 aa24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 TTC12Q9H892 705 aaPredicted RBP24.26■■□□□ 1.47
UBE2D3-216ENST00000503742 ZNF70Q9UC06 446 aaPredicted RBP24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms