RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 MCM7P33993 719 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 PRPHP41219 470 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 EVX2Q03828 476 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 PPP4R3BQ5MIZ7 849 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 USP49Q70CQ1 688 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 KRT25Q7Z3Z0 450 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 SP8Q8IXZ3 490 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 ANKRD20A12PQ8NF67 263 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 TBC1D16Q8TBP0 767 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 PPP1R13BQ96KQ4 1090 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 TMEM47Q9BQJ4 181 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 COA1Q9GZY4 146 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 TMX1Q9H3N1 280 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 CUEDC2Q9H467 287 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 MYO3BQ8WXR4 1341 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 AFMP43652 599 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 CDK8P49336 464 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 FMR1Q06787 632 aaKnown RBP eCLIP13.57□□□□□ -0.24
NUP54-202ENST00000502850 E2F4Q16254 413 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 E4F1Q66K89 784 aaPredicted RBP13.57□□□□□ -0.24
NUP54-202ENST00000502850 DTHD1Q6ZMT9 781 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 GRAMD1CQ8IYS0 662 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 ANKRD7Q92527 254 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 ZNF592Q92610 1267 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 DPF2Q92785 391 aa13.57□□□□□ -0.24
NUP54-202ENST00000502850 SEC63Q9UGP8 760 aaKnown RBP13.57□□□□□ -0.24
NUP54-202ENST00000502850 PHLPP2Q6ZVD8 1323 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 A0A087X0B3 334 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 A0A1B0GTH6 734 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 USP17L3A6NCW0 530 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 USP17L4A6NCW7 530 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 USP27XA6NNY8 438 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 M0R2N6 131 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 STXBP3O00186 592 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 PPEF1O14829 653 aaPredicted RBP13.56□□□□□ -0.24
NUP54-202ENST00000502850 STX10O60499 249 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 TBX2Q13207 712 aaPredicted RBP13.56□□□□□ -0.24
NUP54-202ENST00000502850 CUL4BQ13620 913 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 SOGA3Q5TF21 947 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 WWC2Q6AWC2 1192 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 PDXDC2PQ6P474 469 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 USP17L1Q7RTZ2 530 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 HEATR3Q7Z4Q2 680 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 RRP36Q96EU6 259 aaKnown RBP13.56□□□□□ -0.24
NUP54-202ENST00000502850 AK8Q96MA6 479 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 C6orf50Q9HD87 102 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 TRMT1Q9NXH9 659 aaKnown RBP13.56□□□□□ -0.24
NUP54-202ENST00000502850 KIF13BQ9NQT8 1826 aa13.56□□□□□ -0.24
NUP54-202ENST00000502850 ANKRD31Q8N7Z5 1873 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 ESYT2A0FGR8 921 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 C6orf229H3BNL8 230 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 POLRMTO00411 1230 aaKnown RBP13.55□□□□□ -0.24
NUP54-202ENST00000502850 TPM1P09493 284 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 STAT6P42226 847 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 NOVP48745 357 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 RHBDL3P58872 404 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 STAG2Q8N3U4 1231 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 GPKOWQ92917 476 aaPredicted RBP eCLIP13.55□□□□□ -0.241e-10■■■□□ 14.7
NUP54-202ENST00000502850 CCDC47Q96A33 483 aaKnown RBP13.55□□□□□ -0.24
NUP54-202ENST00000502850 ERO1AQ96HE7 468 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 NAA15Q9BXJ9 866 aaKnown RBP13.55□□□□□ -0.24
NUP54-202ENST00000502850 ZMYND12Q9H0C1 365 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 TMX4Q9H1E5 349 aaPredicted RBP13.55□□□□□ -0.24
NUP54-202ENST00000502850 SWAP70Q9UH65 585 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 SAP30BPQ9UHR5 308 aaKnown RBP13.55□□□□□ -0.24
NUP54-202ENST00000502850 RWDD2AQ9UIY3 292 aa13.55□□□□□ -0.24
NUP54-202ENST00000502850 KLRF2D3W0D1 207 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 NAPAP54920 295 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 NR1I3Q14994 352 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 GRIK5Q16478 980 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 ASPRV1Q53RT3 343 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 ZNF658Q5TYW1 1059 aaPredicted RBP13.54□□□□□ -0.24
NUP54-202ENST00000502850 CDKAL1Q5VV42 579 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 TRMT44Q8IYL2 757 aaKnown RBP13.54□□□□□ -0.24
NUP54-202ENST00000502850 C4orf32Q8N8J7 132 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 BAG1Q99933 345 aaPredicted RBP13.54□□□□□ -0.24
NUP54-202ENST00000502850 CCSER1Q9C0I3 900 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 DISC1Q9NRI5 854 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 CGNQ9P2M7 1197 aaKnown RBP13.54□□□□□ -0.24
NUP54-202ENST00000502850 PCDHA6Q9UN73 950 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 ATP6V0A2Q9Y487 856 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 PCDHA8Q9Y5H6 950 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 PARP3Q9Y6F1 533 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 ITIH6Q6UXX5 1313 aa13.54□□□□□ -0.24
NUP54-202ENST00000502850 BAZ2BQ9UIF8 2168 aaKnown RBP13.54□□□□□ -0.24
NUP54-202ENST00000502850 WNT7AO00755 349 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 SLU7O95391 586 aaKnown RBP13.53□□□□□ -0.24
NUP54-202ENST00000502850 UBA7P41226 1012 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 PPP1R2P41236 205 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 DDR1Q08345 913 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 STIM1Q13586 685 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 TRIM14Q14142 442 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 KCNB1Q14721 858 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 NONOQ15233 471 aaKnown RBP eCLIP13.53□□□□□ -0.24
NUP54-202ENST00000502850 SLC4A8Q2Y0W8 1093 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 PPFIBP1Q86W92 1011 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 HOMER1Q86YM7 354 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 ZNF710Q8N1W2 664 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 PDCL2Q8N4E4 241 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 SLC44A5Q8NCS7 719 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms