RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ATRIPQ8WXE1 791 aa18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 IRX2Q9BZI1 471 aaPredicted RBP18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 BLZF1Q9H2G9 400 aa18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 COBLO75128 1261 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CCDC175P0C221 793 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 TRAPPC10P48553 1259 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PPP2R3AQ06190 1150 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RCSD1Q6JBY9 416 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ZNF771Q7L3S4 317 aaPredicted RBP18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PPFIBP1Q86W92 1011 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CPLX3Q8WVH0 158 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CTAGE1Q96RT6 745 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 NAA15Q9BXJ9 866 aaKnown RBP18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 NYXQ9GZU5 481 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CTNND2Q9UQB3 1225 aa18.21■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PDS5AQ29RF7 1337 aaKnown RBP18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 MFAP3LO75121 409 aa18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 TPM1P09493 284 aa18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 FECHP22830 423 aa18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 NLRP5P59047 1200 aa18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 C4orf32Q8N8J7 132 aa18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 IQUBQ8NA54 791 aa18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ARGLU1Q9NWB6 273 aaPredicted RBP18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 MYH8P13535 1937 aa18.2■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 SBK1Q52WX2 424 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 TMCO3Q6UWJ1 677 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CRNKL1Q9BZJ0 848 aaKnown RBP18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ATP8A2Q9NTI2 1148 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 LIMA1Q9UHB6 759 aaKnown RBP18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ITIH6Q6UXX5 1313 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 LRRC10BA6NIK2 292 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 GTPBP6O43824 516 aaPredicted RBP18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 GYPCP04921 128 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PRDX5P30044 214 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CASP14P31944 242 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 MCM7P33993 719 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 FXR1P51114 621 aaKnown RBP eCLIP18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ST5P78524 1137 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PLCD3Q8N3E9 789 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 NLRP3Q96P20 1036 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CCDC88AQ3V6T2 1871 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 MAST2Q6P0Q8 1798 aa18.19■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 SEC31AO94979 1220 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 KRT31Q15323 416 aa18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 FILIP1LQ4L180 1135 aa18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RRAGBQ5VZM2 374 aa18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RASGRP2Q7LDG7 609 aa18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 GPR161Q8N6U8 529 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CCDC12Q8WUD4 166 aaPredicted RBP18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 MTFR1LQ9H019 292 aa18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RWDD2AQ9UIY3 292 aa18.18■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 HIBADHP31937 336 aaKnown RBP18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RPS8P62241 208 aaKnown RBP18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 LZTFL1Q9NQ48 299 aa18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ARPP21Q9UBL0 812 aaPredicted RBP18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 FAM205AQ6ZU69 1335 aa18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 COL11A2P13942 1736 aaPredicted RBP18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RNF225M0QZC1 329 aaPredicted RBP18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CCT6AP40227 531 aaKnown RBP18.17■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PTGER2P43116 358 aa18.16■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 TEX35Q5T0J7 233 aa18.16■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CC2D1AQ6P1N0 951 aaPredicted RBP18.16■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ZNF622Q969S3 477 aaKnown RBP eCLIP18.16■□□□□ 0.51e-7■□□□□ 10.4
MSH5-SAPCD1-208ENST00000498473 CCDC51Q96ER9 411 aa18.16■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PYM1Q9BRP8 204 aaKnown RBP18.16■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 TSPY2A6NKD2 308 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 SOCS7O14512 581 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 TBC1D8O95759 1140 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ZNF658Q5TYW1 1059 aaPredicted RBP18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ARL6IP4Q66PJ3 421 aaKnown RBP18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 TXNRD3Q86VQ6 643 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CNGA4Q8IV77 575 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RABGGTAQ92696 567 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 UBXN6Q9BZV1 441 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 IL17RBQ9NRM6 502 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 M0R2N6 131 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ATP8B1O43520 1251 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 SASH3O75995 380 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 USP17L8P0C7I0 530 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 CDC25AP30304 524 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 COPB1P53618 953 aaKnown RBP18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 ERVK-24P63145 666 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PAK1Q13153 545 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 BLIDQ8IZY5 108 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 NELFBQ8WX92 580 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 PARD6BQ9BYG5 372 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 IRS2Q9Y4H2 1338 aa18.15■□□□□ 0.5
MSH5-SAPCD1-208ENST00000498473 RPN1P04843 607 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 HMGB2P26583 209 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 LONP1P36776 959 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TYW1BQ6NUM6 668 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 STAG2Q8N3U4 1231 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 GPKOWQ92917 476 aaPredicted RBP eCLIP18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 VPS16Q9H269 839 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 MKRN1Q9UHC7 482 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 GDAQ9Y2T3 454 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 N4BP3O15049 544 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 CALML3P27482 149 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 KIF5BP33176 963 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SLC35G1Q2M3R5 365 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms