RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ATP8B2P98198 1209 aa19.97■□□□□ 0.79
VIM-208ENST00000497849 ICA1Q05084 483 aa19.97■□□□□ 0.79
VIM-208ENST00000497849 FAM126BQ8IXS8 530 aa19.97■□□□□ 0.79
VIM-208ENST00000497849 HERVK_113Q902F9 699 aa19.97■□□□□ 0.79
VIM-208ENST00000497849 DYNLL2Q96FJ2 89 aa19.97■□□□□ 0.79
VIM-208ENST00000497849 TRANK1O15050 2925 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 MCM3APO60318 1980 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 CCER2I3L3R5 266 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 ARVCFO00192 962 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 VWA5AO00534 786 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 ADCY6O43306 1168 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 DUSP11O75319 330 aaKnown RBP19.96■□□□□ 0.79
VIM-208ENST00000497849 BCAR3O75815 825 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 ASGR1P07306 291 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 TFF2Q03403 129 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 MSL3Q8N5Y2 521 aaKnown RBP19.96■□□□□ 0.79
VIM-208ENST00000497849 SDR42E1Q8WUS8 393 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 CRNKL1Q9BZJ0 848 aaKnown RBP19.96■□□□□ 0.79
VIM-208ENST00000497849 SH2D4AQ9H788 454 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 SLC28A3Q9HAS3 691 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 IL23AQ9NPF7 189 aa19.96■□□□□ 0.79
VIM-208ENST00000497849 DCP1AQ9NPI6 582 aaPredicted RBP19.96■□□□□ 0.79
VIM-208ENST00000497849 NOP58Q9Y2X3 529 aaKnown RBP19.96■□□□□ 0.79
VIM-208ENST00000497849 MAMDC4Q6UXC1 1216 aa19.95■□□□□ 0.78
VIM-208ENST00000497849 SWAP70Q9UH65 585 aa19.95■□□□□ 0.78
VIM-208ENST00000497849 ZHX1Q9UKY1 873 aaPredicted RBP19.95■□□□□ 0.78
VIM-208ENST00000497849 PPP1R9AQ9ULJ8 1098 aa19.95■□□□□ 0.78
VIM-208ENST00000497849 SYNGAP1Q96PV0 1343 aa19.95■□□□□ 0.78
VIM-208ENST00000497849 A0A0U1RQG5 324 aaPredicted RBP19.94■□□□□ 0.78
VIM-208ENST00000497849 SMIM22K7EJ46 135 aa19.94■□□□□ 0.78
VIM-208ENST00000497849 C6orf222P0C671 652 aaPredicted RBP19.94■□□□□ 0.78
VIM-208ENST00000497849 CYP2C18P33260 490 aa19.94■□□□□ 0.78
VIM-208ENST00000497849 KCNQ1P51787 676 aa19.94■□□□□ 0.78
VIM-208ENST00000497849 PCSK9Q8NBP7 692 aaKnown RBP19.94■□□□□ 0.78
VIM-208ENST00000497849 CLUAP1Q96AJ1 413 aa19.94■□□□□ 0.78
VIM-208ENST00000497849 ARIH1Q9Y4X5 557 aaPredicted RBP19.94■□□□□ 0.78
VIM-208ENST00000497849 BAZ2AQ9UIF9 1905 aaKnown RBP19.94■□□□□ 0.78
VIM-208ENST00000497849 PRRC2BQ5JSZ5 2229 aaKnown RBP19.93■□□□□ 0.78
VIM-208ENST00000497849 DNAJC25-GNG10A0A024R161 153 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 APBB1O00213 710 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 CD4P01730 458 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 PDE6AP16499 860 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 COPB2P35606 906 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 VTI1AQ96AJ9 217 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 LRFN3Q9BTN0 628 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 UPF3AQ9H1J1 476 aaKnown RBP19.93■□□□□ 0.78
VIM-208ENST00000497849 TSPYL2Q9H2G4 693 aaPredicted RBP19.93■□□□□ 0.78
VIM-208ENST00000497849 EPHX3Q9H6B9 360 aa19.93■□□□□ 0.78
VIM-208ENST00000497849 CTAGE5O15320 804 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 IPO8O15397 1037 aaKnown RBP19.92■□□□□ 0.78
VIM-208ENST00000497849 FGBP02675 491 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 EEF2P13639 858 aaKnown RBP19.92■□□□□ 0.78
VIM-208ENST00000497849 GJA9P57773 515 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 SLC9C2Q5TAH2 1124 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 LCORLQ8N3X6 602 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 C1orf115Q9H7X2 142 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 RIPK3Q9Y572 518 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 UMODL1Q5DID0 1318 aa19.92■□□□□ 0.78
VIM-208ENST00000497849 TLR3O15455 904 aaKnown RBP19.91■□□□□ 0.78
VIM-208ENST00000497849 MYOGP15173 224 aa19.91■□□□□ 0.78
VIM-208ENST00000497849 RABGGTBP53611 331 aa19.91■□□□□ 0.78
VIM-208ENST00000497849 ACVR2BQ13705 512 aa19.91■□□□□ 0.78
VIM-208ENST00000497849 OTOP2Q7RTS6 562 aa19.91■□□□□ 0.78
VIM-208ENST00000497849 MICALL1Q8N3F8 863 aa19.91■□□□□ 0.78
VIM-208ENST00000497849 TMEM57Q8N5G2 664 aa19.91■□□□□ 0.78
VIM-208ENST00000497849 ZNF532Q9HCE3 1301 aa19.91■□□□□ 0.78
VIM-208ENST00000497849 TCRBV5S4A2TA0A5A2 114 aa19.9■□□□□ 0.78
VIM-208ENST00000497849 CCDC144BQ3MJ40 725 aa19.9■□□□□ 0.78
VIM-208ENST00000497849 GNASQ5JWF2 1037 aa19.9■□□□□ 0.78
VIM-208ENST00000497849 FAM83BQ5T0W9 1011 aa19.9■□□□□ 0.78
VIM-208ENST00000497849 ZNF467Q7Z7K2 595 aaPredicted RBP19.9■□□□□ 0.78
VIM-208ENST00000497849 FRAT1Q92837 279 aaPredicted RBP19.9■□□□□ 0.78
VIM-208ENST00000497849 CCDC17Q96LX7 622 aa19.9■□□□□ 0.78
VIM-208ENST00000497849 FGD4Q96M96 766 aa19.9■□□□□ 0.78
VIM-208ENST00000497849 MTIF3Q9H2K0 278 aaKnown RBP19.9■□□□□ 0.78
VIM-208ENST00000497849 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.9■□□□□ 0.78
VIM-208ENST00000497849 ERC2O15083 957 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 CDK8P49336 464 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 AAK1Q2M2I8 961 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 PPP2R2DQ66LE6 453 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 SNRNP48Q6IEG0 339 aaKnown RBP19.89■□□□□ 0.77
VIM-208ENST00000497849 PIEZO1Q92508 2521 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 DDX11Q96FC9 970 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 TEX13BQ9BXU2 312 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 SPC25Q9HBM1 224 aa19.89■□□□□ 0.77
VIM-208ENST00000497849 CYP2D7A0A087X1C5 515 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 PRKAB2O43741 272 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 NKX3-2P78367 333 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 SLC43A3Q8NBI5 491 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 VWCEQ96DN2 955 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 KATNBL1Q9H079 304 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 ABHD16BQ9H3Z7 469 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 HIPK3Q9H422 1215 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 ARMT1Q9H993 441 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 KANSL2Q9H9L4 492 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 HCN4Q9Y3Q4 1203 aa19.88■□□□□ 0.77
VIM-208ENST00000497849 GREB1LQ9C091 1923 aaPredicted RBP19.87■□□□□ 0.77
VIM-208ENST00000497849 CCL23P55773 120 aa19.87■□□□□ 0.77
VIM-208ENST00000497849 BEX3Q00994 111 aa19.87■□□□□ 0.77
VIM-208ENST00000497849 TTF1Q15361 905 aaPredicted RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms