RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 PRKAR2AP13861 404 aaKnown RBP12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 ADORA2AP29274 412 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 COPB2P35606 906 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 ZNF792Q3KQV3 632 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 PRPF38BQ5VTL8 546 aaKnown RBP12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 LRRC47Q8N1G4 583 aaKnown RBP12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 TEX13BQ9BXU2 312 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 DIAPH3Q9NSV4 1193 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 BIN2Q9UBW5 565 aaPredicted RBP12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 ZNF213O14771 459 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 SGSM2O43147 1006 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 RANBP6O60518 1105 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 MYCP01106 439 aaPredicted RBP12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 TOP1P11387 765 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 ZKSCAN1P17029 563 aaPredicted RBP12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 MFSD6Q6ZSS7 791 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 DGKHQ86XP1 1220 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 CCAR1Q8IX12 1150 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 TRPV1Q8NER1 839 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 TMEM47Q9BQJ4 181 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 RNF41Q9H4P4 317 aaPredicted RBP12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 IVNS1ABPQ9Y6Y0 642 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 LAMA4Q16363 1823 aa12.89□□□□□ -0.35
SHROOM3-210ENST00000497440 COL6A1P12109 1028 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 FCER1AP12319 257 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 CYBAP13498 195 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 MCCP23508 829 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 HAND2P61296 217 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 MAMDC4Q6UXC1 1216 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 CENPQQ7L2Z9 268 aaPredicted RBP12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 FAM160B2Q86V87 743 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 CHURC1Q8WUH1 139 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 MAML3Q96JK9 1138 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 NRBP1Q9UHY1 535 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 CTNNA3Q9UI47 895 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 STX8Q9UNK0 236 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 LAMA2P24043 3122 aaKnown RBP12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 NEDD4P46934 1319 aa12.88□□□□□ -0.35
SHROOM3-210ENST00000497440 TMEM232C9JQI7 657 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 CCND3P30281 292 aaPredicted RBP12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 STAT2P52630 851 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 ZNF467Q7Z7K2 595 aaPredicted RBP12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 NCAPG2Q86XI2 1143 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 MSL3Q8N5Y2 521 aaKnown RBP12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 DCAF4Q8WV16 495 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 MAP4K1Q92918 833 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 FGD4Q96M96 766 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 ZSWIM5Q9P217 1185 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 SMCHD1A6NHR9 2005 aa12.87□□□□□ -0.35
SHROOM3-210ENST00000497440 ZBED4O75132 1171 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 PDHBP11177 359 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 CYP2C19P33261 490 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 SLC1A4P43007 532 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 PTH1RQ03431 593 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 MFSD14CQ5VZR4 134 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 DPP9Q86TI2 863 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 CHST13Q8NET6 341 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 ESR2Q92731 530 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 RANBP17Q9H2T7 1088 aaKnown RBP12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 PRR12Q9ULL5 1215 aa12.86□□□□□ -0.35
SHROOM3-210ENST00000497440 MSCO60682 206 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 FARP2O94887 1054 aaPredicted RBP12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 TFRCP02786 760 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 CYP21A2P08686 494 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 PLS1Q14651 629 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 SEC23AQ15436 765 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 IMMTQ16891 758 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 TKFCQ3LXA3 575 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 CCDC178Q5BJE1 867 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 BMP2KLQ5H9B9 411 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 SNRNP48Q6IEG0 339 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 RASGRP2Q7LDG7 609 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 RUFY2Q8WXA3 655 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 KIFC2Q96AC6 838 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 PAWRQ96IZ0 340 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 TINF2Q9BSI4 451 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 PRO3102Q9H379 93 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 SLC5A4Q9NY91 659 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 FBXO40Q9UH90 709 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 TRIOBPQ9H2D6 2365 aa12.85□□□□□ -0.35
SHROOM3-210ENST00000497440 SEPT4O43236 478 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 ZNF543Q08ER8 600 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 KCTD2Q14681 263 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 WDR78Q5VTH9 848 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 KCTD1Q719H9 257 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 ENAHQ8N8S7 591 aaPredicted RBP12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 FAM133AQ8N9E0 248 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 MMP19Q99542 508 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 KATNBL1Q9H079 304 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 CNNM2Q9H8M5 875 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 RAVER2Q9HCJ3 691 aaKnown RBP12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 DDX20Q9UHI6 824 aaKnown RBP12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 PLXNA1Q9UIW2 1896 aa12.84□□□□□ -0.35
SHROOM3-210ENST00000497440 B4E1Z4 1266 aa12.83□□□□□ -0.36
SHROOM3-210ENST00000497440 KDM4AO75164 1064 aa12.83□□□□□ -0.36
SHROOM3-210ENST00000497440 SNAI1O95863 264 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-210ENST00000497440 PGK2P07205 417 aa12.83□□□□□ -0.36
SHROOM3-210ENST00000497440 ZNF865P0CJ78 1059 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-210ENST00000497440 RRP12Q5JTH9 1297 aaKnown RBP12.83□□□□□ -0.36
SHROOM3-210ENST00000497440 TTBK2Q6IQ55 1244 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms