RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 DMAP1Q9NPF5 467 aaPredicted RBP6.39□□□□□ -1.39
USF3-204ENST00000496826 TLK1Q9UKI8 766 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 TELO2Q9Y4R8 837 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 GMEB1Q9Y692 573 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 ABCC9O60706 1549 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 NBNO60934 754 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 GSTA1P08263 222 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 GSTA2P09210 222 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 WARSP23381 471 aaKnown RBP6.39□□□□□ -1.39
USF3-204ENST00000496826 GPR1P46091 355 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 SUZ12Q15022 739 aaKnown RBP6.39□□□□□ -1.39
USF3-204ENST00000496826 TTF1Q15361 905 aaPredicted RBP6.39□□□□□ -1.39
USF3-204ENST00000496826 CADPS2Q86UW7 1296 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 FAM178BQ8IXR5 827 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 ASPSCR1Q9BZE9 553 aa6.39□□□□□ -1.39
USF3-204ENST00000496826 MYCNP04198 464 aaPredicted RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 KRT16P08779 473 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 RALBP11234 206 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 HNRNPH1P31943 449 aaKnown RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 DEFA1P59665 94 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 DEFA3P59666 94 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 TNFAIP2Q03169 654 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 RASA3Q14644 834 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 STXBP2Q15833 593 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 HS2ST1Q7LGA3 356 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 TRIM69Q86WT6 500 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 GPIHBP1Q8IV16 184 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 RUNDC3BQ96NL0 473 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 FHDC1Q9C0D6 1143 aaPredicted RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 ZNF304Q9HCX3 659 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 PACSIN2Q9UNF0 486 aaPredicted RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 CCDC194A0A1B0GVG4 234 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 ZNF233A6NK53 670 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 CHEK2O96017 543 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SERPINH1P50454 418 aaKnown RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 GRAMD4Q6IC98 578 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 PADI6Q6TGC4 694 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SH2D4AQ9H788 454 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 TRIM39Q9HCM9 518 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 IMPACTQ9P2X3 320 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 DENND2AQ9ULE3 1009 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 USTQ9Y2C2 406 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 TEX46H3BTG2 121 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 ATF3P18847 181 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 MSH2P43246 934 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 HNMTP50135 292 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 GNAQP50148 359 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 FKBP4Q02790 459 aaKnown RBP eCLIP6.38□□□□□ -1.39
USF3-204ENST00000496826 CUL4AQ13619 759 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 KRT33BQ14525 404 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 PHKG1Q16816 387 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SGO2Q562F6 1265 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 NAF1Q96HR8 494 aaKnown RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 GCNAQ96QF7 691 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 TEKT3Q9BXF9 490 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 C6orf50Q9HD87 102 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SNX9Q9Y5X1 595 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SOX12O15370 315 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 KRT86O43790 486 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 GUCA1CO95843 209 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 CPP00450 1065 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 ARL3P36405 182 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 CAVIN4Q5BKX8 364 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 TJAP1Q5JTD0 557 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 AP1S3Q96PC3 154 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 CABP1Q9NZU7 370 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 TRPC4Q9UBN4 977 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 EXOC7Q9UPT5 735 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 RGL3Q3MIN7 710 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 KLHL12Q53G59 568 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 CARD16Q5EG05 197 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 NT5DC4Q86YG4 428 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 CKAP2LQ8IYA6 745 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 HIPK4Q8NE63 616 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 KDM4CQ9H3R0 1056 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 GSTA4O15217 222 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 ABCD1P33897 745 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SLC30A9Q6PML9 568 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SNIP1Q8TAD8 396 aaKnown RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 UPF3AQ9H1J1 476 aaKnown RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 NRDE2Q9H7Z3 1164 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SPDYE2BA6NHP3 402 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 KRT1P04264 644 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SPDYE6P0CI01 402 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 MUM1Q2TAK8 710 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 KANK4Q5T7N3 995 aaPredicted RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 ATG16L1Q676U5 607 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 USHBP1Q8N6Y0 703 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 SLC7A5P2Q9GIP4 190 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 UBA5Q9GZZ9 404 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 PAIP1Q9H074 479 aaKnown RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 DNAJC25Q9H1X3 360 aa6.38□□□□□ -1.39
USF3-204ENST00000496826 PA2G4Q9UQ80 394 aaKnown RBP6.38□□□□□ -1.39
USF3-204ENST00000496826 PPP6R2O75170 966 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 ATP2C2O75185 946 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 SASH3O75995 380 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 EEF2P13639 858 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 S100A1P23297 94 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 ENGASEQ8NFI3 743 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 PARD3BQ8TEW8 1205 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms