RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 PLA2G6O60733 806 aa22.73■■□□□ 1.23
HDAC4-212ENST00000495497 ZBED4O75132 1171 aa22.73■■□□□ 1.23
HDAC4-212ENST00000495497 CASTP20810 708 aaKnown RBP22.73■■□□□ 1.23
HDAC4-212ENST00000495497 MTA3Q9BTC8 594 aa22.73■■□□□ 1.23
HDAC4-212ENST00000495497 MYL10Q9BUA6 226 aa22.73■■□□□ 1.23
HDAC4-212ENST00000495497 HMGB1P09429 215 aaKnown RBP22.72■■□□□ 1.23
HDAC4-212ENST00000495497 SYDE2Q5VT97 1194 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 WDR78Q5VTH9 848 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 BLOC1S2Q6QNY1 142 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 BTNL9Q6UXG8 535 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 RAB11FIP4Q86YS3 637 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 CPXCR1Q8N123 301 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 STAG2Q8N3U4 1231 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 MCOLN1Q9GZU1 580 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 SLC38A10Q9HBR0 1119 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 RAVER2Q9HCJ3 691 aaKnown RBP22.72■■□□□ 1.23
HDAC4-212ENST00000495497 GABRQQ9UN88 632 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 CTDP1Q9Y5B0 961 aaPredicted RBP22.72■■□□□ 1.23
HDAC4-212ENST00000495497 PARP14Q460N5 1801 aa22.72■■□□□ 1.23
HDAC4-212ENST00000495497 CCDC69A6NI79 296 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 PARP1P09874 1014 aaKnown RBP22.71■■□□□ 1.23
HDAC4-212ENST00000495497 RPS6KB1P23443 525 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 PSMA5P28066 241 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 LIFRP42702 1097 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 SLC4A3P48751 1232 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 CCNA1P78396 465 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 TROAPQ12815 778 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 ARHGEF6Q15052 776 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 GPATCH4Q5T3I0 446 aaKnown RBP22.71■■□□□ 1.23
HDAC4-212ENST00000495497 CCDC174Q6PII3 467 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 CATIPQ7Z7H3 387 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 CCAR1Q8IX12 1150 aaKnown RBP22.71■■□□□ 1.23
HDAC4-212ENST00000495497 ZNF654Q8IZM8 581 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 NUP133Q8WUM0 1156 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 MAD2L2Q9UI95 211 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 ZNF214Q9UL59 606 aaPredicted RBP22.71■■□□□ 1.23
HDAC4-212ENST00000495497 WDR19Q8NEZ3 1342 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 A0A0G2JMZ2 1700 aa22.71■■□□□ 1.23
HDAC4-212ENST00000495497 ERCC3P19447 782 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 MAPK4P31152 587 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 STAT3P40763 770 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 PRKCZQ05513 592 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 GRM4Q14833 912 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 ASPRV1Q53RT3 343 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 Q6ZUG5 572 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 GPR142Q7Z601 462 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 NCAPG2Q86XI2 1143 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 SRRDQ9UH36 339 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 PTPN22Q9Y2R2 807 aa22.7■■□□□ 1.22
HDAC4-212ENST00000495497 EIF5BO60841 1220 aaKnown RBP22.69■■□□□ 1.22
HDAC4-212ENST00000495497 TAL1P17542 331 aaPredicted RBP22.69■■□□□ 1.22
HDAC4-212ENST00000495497 RXRAP19793 462 aa22.69■■□□□ 1.22
HDAC4-212ENST00000495497 SNRNP48Q6IEG0 339 aaKnown RBP22.69■■□□□ 1.22
HDAC4-212ENST00000495497 PLEKHH3Q7Z736 793 aa22.69■■□□□ 1.22
HDAC4-212ENST00000495497 TMTC2Q8N394 836 aa22.69■■□□□ 1.22
HDAC4-212ENST00000495497 COA7Q96BR5 231 aa22.69■■□□□ 1.22
HDAC4-212ENST00000495497 UPF3BQ9BZI7 483 aaKnown RBP22.69■■□□□ 1.22
HDAC4-212ENST00000495497 CWC22Q9HCG8 908 aaKnown RBP22.69■■□□□ 1.22
HDAC4-212ENST00000495497 ZSWIM6Q9HCJ5 1215 aa22.69■■□□□ 1.22
HDAC4-212ENST00000495497 RIPK3Q9Y572 518 aa22.69■■□□□ 1.22
HDAC4-212ENST00000495497 PTCH2Q9Y6C5 1203 aa22.69■■□□□ 1.22
HDAC4-212ENST00000495497 ZNF536O15090 1300 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 PALM3A6NDB9 673 aaPredicted RBP22.68■■□□□ 1.22
HDAC4-212ENST00000495497 GNRH1P01148 92 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 HOXD10P28358 340 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 RUFY3Q7L099 469 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 RIOX2Q8IUF8 465 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 CCDC144CPQ8IYA2 1237 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 AGBL1Q96MI9 1066 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 VAT1LQ9HCJ6 419 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 BRPF3Q9ULD4 1205 aa22.68■■□□□ 1.22
HDAC4-212ENST00000495497 KLRF2D3W0D1 207 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 FLT3LGP49771 235 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 FGD1P98174 961 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 SGMS1Q86VZ5 419 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 ADGRF4Q8IZF3 695 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 TEX13BQ9BXU2 312 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 TM6SF1Q9BZW5 370 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 RANBP17Q9H2T7 1088 aaKnown RBP22.67■■□□□ 1.22
HDAC4-212ENST00000495497 GJD2Q9UKL4 321 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 SLC12A7Q9Y666 1083 aa22.67■■□□□ 1.22
HDAC4-212ENST00000495497 COL11A1P12107 1806 aaPredicted RBP22.66■■□□□ 1.22
HDAC4-212ENST00000495497 DDAH1O94760 285 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 FDX1P10109 184 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 APOBRQ0VD83 1088 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 SLC35G1Q2M3R5 365 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 FBXO46Q6PJ61 603 aaPredicted RBP22.66■■□□□ 1.22
HDAC4-212ENST00000495497 NBPF11Q86T75 865 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 TNS4Q8IZW8 715 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 SHCBP1Q8NEM2 672 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 BRF1Q92994 677 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 CYP46A1Q9Y6A2 500 aa22.66■■□□□ 1.22
HDAC4-212ENST00000495497 KLF18A0A0U1RQI7 1052 aa22.65■■□□□ 1.22
HDAC4-212ENST00000495497 ATP2A1O14983 1001 aa22.65■■□□□ 1.22
HDAC4-212ENST00000495497 DHX16O60231 1041 aaKnown RBP22.65■■□□□ 1.22
HDAC4-212ENST00000495497 SLC25A27O95847 323 aa22.65■■□□□ 1.22
HDAC4-212ENST00000495497 PTPREP23469 700 aa22.65■■□□□ 1.22
HDAC4-212ENST00000495497 ANAPC15P60006 121 aa22.65■■□□□ 1.22
HDAC4-212ENST00000495497 PKN2Q16513 984 aaKnown RBP22.65■■□□□ 1.22
HDAC4-212ENST00000495497 MROH8Q9H579 483 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms