RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	MMP19	Q99542	508 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	NAPB	Q9H115	298 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	PRUNE2	Q8WUY3	3088 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	CUL9	Q8IWT3	2517 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	DNM1L	O00429	736 aa		13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	SEPT4	O43236	478 aa		13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	SLC25A27	O95847	323 aa		13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	ATN1	P54259	1190 aa	Predicted RBP	13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	SNRNP48	Q6IEG0	339 aa	Known RBP	13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	NEDD1	Q8NHV4	660 aa		13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	MKL1	Q969V6	931 aa		13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	LNPK	Q9C0E8	428 aa		13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.87	□□□□□ -0.19
VTI1A-208	ENST00000494728	MSC	O60682	206 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	TTLL1	O95922	423 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	TSPY3	P0CV98	308 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	TSPY8	P0CW00	308 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	TFAP4	Q01664	338 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	GMCL1P1	Q8NEA9	526 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	KIFC2	Q96AC6	838 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	FGD4	Q96M96	766 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	TEX13B	Q9BXU2	312 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	NACAP1	Q9BZK3	213 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	RAVER2	Q9HCJ3	691 aa	Known RBP	13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	IL17RB	Q9NRM6	502 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728	VCAN	P13611	3396 aa		13.86	□□□□□ -0.19
VTI1A-208	ENST00000494728		A0A1W2PPC1	479 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	IGHD	P01880	384 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	BMP8B	P34820	402 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	PDE4B	Q07343	736 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	KCTD2	Q14681	263 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	SMC5	Q8IY18	1101 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	CPXCR1	Q8N123	301 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	EXOC6	Q8TAG9	804 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	EVI5L	Q96CN4	794 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	TINF2	Q9BSI4	451 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	SLC38A10	Q9HBR0	1119 aa		13.85	□□□□□ -0.19
VTI1A-208	ENST00000494728	CHD9	Q3L8U1	2897 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	DNAJC25-GNG10	A0A024R161	153 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	ATP2A1	O14983	1001 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	ADCY6	O43306	1168 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	SLC4A3	P48751	1232 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	MDM2	Q00987	491 aa	Predicted RBP	13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	NMI	Q13287	307 aa	Predicted RBP	13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	LRRC41	Q15345	812 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	SLFN13	Q68D06	897 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	B4GALNT3	Q6L9W6	998 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	PRPF38A	Q8NAV1	312 aa	Known RBP	13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	ZNF536	O15090	1300 aa		13.84	□□□□□ -0.19
VTI1A-208	ENST00000494728	MYCN	P04198	464 aa	Predicted RBP	13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	BMP3	P12645	472 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	RTP1	P59025	263 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	ZNF287	Q9HBT7	754 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	SLC5A4	Q9NY91	659 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	ANAPC4	Q9UJX5	808 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	FEM1B	Q9UK73	627 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	SYNPO2	Q9UMS6	1093 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	DDX49	Q9Y6V7	483 aa	Known RBP	13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	MYH6	P13533	1939 aa		13.83	□□□□□ -0.2
VTI1A-208	ENST00000494728	TSPY2	A6NKD2	308 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	TMEM232	C9JQI7	657 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	SNAI1	O95863	264 aa	Predicted RBP	13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	PGK1	P00558	417 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	COPB2	P35606	906 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	ADCYAP1R1	P41586	468 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	NOV	P48745	357 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	SNAP25	P60880	206 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	IRX5	P78411	483 aa	Predicted RBP	13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	SNX17	Q15036	470 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	KCTD1	Q719H9	257 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	TBC1D10C	Q8IV04	446 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	FERMT2	Q96AC1	680 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	GMCL1	Q96IK5	515 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	HELLS	Q9NRZ9	838 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	HOMER2	Q9NSB8	354 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	STX8	Q9UNK0	236 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	ATP11B	Q9Y2G3	1177 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	DIS3	Q9Y2L1	958 aa	Known RBP	13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	ASTN1	O14525	1302 aa		13.82	□□□□□ -0.2
VTI1A-208	ENST00000494728	MYADML2	A6NDP7	307 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	KBTBD13	C9JR72	458 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	ORC4	O43929	436 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	RANBP6	O60518	1105 aa	Known RBP	13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	ADAMTS4	O75173	837 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	FGA	P02671	866 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	SLC3A2	P08195	630 aa	Known RBP	13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	FGR	P09769	529 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	HSPD1	P10809	573 aa	Known RBP	13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	MCC	P23508	829 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	STAT2	P52630	851 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	HAND2	P61296	217 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	ALX1	Q15699	326 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	TRIM60	Q495X7	471 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	PLEKHM2	Q8IWE5	1019 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	TDH	Q8IZJ6	230 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms