RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 COL2A1P02458 1487 aaPredicted RBP12.24□□□□□ -0.45
USP4-214ENST00000491791 ERCC5P28715 1186 aaPredicted RBP12.24□□□□□ -0.45
USP4-214ENST00000491791 LONP1P36776 959 aaKnown RBP12.24□□□□□ -0.45
USP4-214ENST00000491791 PRPHP41219 470 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 KCNJ6P48051 423 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 PLCB2Q00722 1185 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 PNOCQ13519 176 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 FER1L6Q2WGJ9 1857 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 STRIP1Q5VSL9 837 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 APOBEC3HQ6NTF7 200 aaKnown RBP12.24□□□□□ -0.45
USP4-214ENST00000491791 SLC44A5Q8NCS7 719 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 ENOX1Q8TC92 643 aaKnown RBP12.24□□□□□ -0.45
USP4-214ENST00000491791 C7orf43Q8WVR3 580 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 MTMR4Q9NYA4 1195 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 SERTAD1Q9UHV2 236 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 DICER1Q9UPY3 1922 aaKnown RBP12.24□□□□□ -0.45
USP4-214ENST00000491791 KLRF2D3W0D1 207 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 DDNO94850 711 aaPredicted RBP12.23□□□□□ -0.45
USP4-214ENST00000491791 SMC2O95347 1197 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 PARP1P09874 1014 aaKnown RBP12.23□□□□□ -0.45
USP4-214ENST00000491791 BMP6P22004 513 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 PTGS1P23219 599 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 PTGDRQ13258 359 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 E2F4Q16254 413 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 ASPRV1Q53RT3 343 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 OLFM4Q6UX06 510 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 ERCC4Q92889 916 aaPredicted RBP12.23□□□□□ -0.45
USP4-214ENST00000491791 TEKT1Q969V4 418 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 CEP95Q96GE4 821 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 CCDC17Q96LX7 622 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 GSDMAQ96QA5 445 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 IDI2Q9BXS1 227 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 DHX36Q9H2U1 1008 aaKnown RBP12.23□□□□□ -0.45
USP4-214ENST00000491791 SAP30BPQ9UHR5 308 aaKnown RBP12.23□□□□□ -0.45
USP4-214ENST00000491791 MAN1B1Q9UKM7 699 aa12.23□□□□□ -0.45
USP4-214ENST00000491791 TTF2Q9UNY4 1162 aaKnown RBP12.23□□□□□ -0.45
USP4-214ENST00000491791 hCG_1642624A0A1W2PR95 340 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 WNT7AO00755 349 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 CBFA2T2O43439 604 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 ZNF18P17022 549 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 WWC2Q6AWC2 1192 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 TYW1BQ6NUM6 668 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 CDC42EP5Q6NZY7 148 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 KRT25Q7Z3Z0 450 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 LDHDQ86WU2 507 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 LRRC8AQ8IWT6 810 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 RTKN2Q8IZC4 609 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 SPC24Q8NBT2 197 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 CACTINQ8WUQ7 758 aaKnown RBP12.22□□□□□ -0.45
USP4-214ENST00000491791 SMARCE1Q969G3 411 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 MKL1Q969V6 931 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 PRIMPOLQ96LW4 560 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 ZNF830Q96NB3 372 aaPredicted RBP12.22□□□□□ -0.45
USP4-214ENST00000491791 SERPINB13Q9UIV8 391 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 PYCARDQ9ULZ3 195 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 PCDHA6Q9UN73 950 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 PCDHA8Q9Y5H6 950 aa12.22□□□□□ -0.45
USP4-214ENST00000491791 SLX4Q8IY92 1834 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 RIMBP2O15034 1052 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 MYL1P05976 194 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 PDHBP11177 359 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 GNA11P29992 359 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 SHMT1P34896 483 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 DPYDQ12882 1025 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 ZNF174Q15697 407 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 IL17AQ16552 155 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 CCDC144BQ3MJ40 725 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 DACT2Q5SW24 774 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 PPP1R18Q6NYC8 613 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 PIK3AP1Q6ZUJ8 805 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 USP49Q70CQ1 688 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 DRC7Q8IY82 874 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 IQUBQ8NA54 791 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 SYMPKQ92797 1274 aaKnown RBP12.21□□□□□ -0.45
USP4-214ENST00000491791 RRP36Q96EU6 259 aaKnown RBP12.21□□□□□ -0.45
USP4-214ENST00000491791 PAGE5Q96GU1 130 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 L3MBTL3Q96JM7 780 aaPredicted RBP12.21□□□□□ -0.45
USP4-214ENST00000491791 AK8Q96MA6 479 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 CCSER1Q9C0I3 900 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 USP40Q9NVE5 1235 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 NRBP1Q9UHY1 535 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 STX8Q9UNK0 236 aa12.21□□□□□ -0.45
USP4-214ENST00000491791 A0A087WWV3 80 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 A0A087X0B3 334 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 BIN1O00499 593 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 FOXN1O15353 648 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 CRKP46108 304 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 FANCCQ00597 558 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 NOM1Q5C9Z4 860 aaKnown RBP12.2□□□□□ -0.46
USP4-214ENST00000491791 SPECC1Q5M775 1068 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 PDXDC2PQ6P474 469 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 TEX2Q8IWB9 1127 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 CCDC150Q8NCX0 1101 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 SUPT20HQ8NEM7 779 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 MTMR8Q96EF0 704 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 EPSTI1Q96J88 318 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 TAF1DQ9H5J8 278 aaPredicted RBP12.2□□□□□ -0.46
USP4-214ENST00000491791 C6orf50Q9HD87 102 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 DDX4Q9NQI0 724 aaKnown RBP12.2□□□□□ -0.46
USP4-214ENST00000491791 SERPINA10Q9UK55 444 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms