RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 GJB4Q9NTQ9 266 aa8.24□□□□□ -1.09
NPHP3-208ENST00000490993 PI4KBQ9UBF8 816 aa8.24□□□□□ -1.09
NPHP3-208ENST00000490993 PNMA2Q9UL42 364 aa8.24□□□□□ -1.09
NPHP3-208ENST00000490993 USP17L3A6NCW0 530 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 USP17L4A6NCW7 530 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 CCDC172P0C7W6 258 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 TCP10Q12799 353 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 RBM43Q6ZSC3 357 aaKnown RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 ZNF771Q7L3S4 317 aaPredicted RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 USP17L1Q7RTZ2 530 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 LRRC47Q8N1G4 583 aaKnown RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 FRMPD2Q68DX3 1309 aaPredicted RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 RPL13P26373 211 aaKnown RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 ICA1Q05084 483 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 MAP9Q49MG5 647 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 TBC1D16Q8TBP0 767 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 ERO1AQ96HE7 468 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 BLZF1Q9H2G9 400 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 SPEF2Q9C093 1822 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 KRT86O43790 486 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 MMP10P09238 476 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 CKAP4Q07065 602 aaKnown RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 MORC3Q14149 939 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 TDRD12Q587J7 1177 aaKnown RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 SLFN13Q68D06 897 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 KIAA0825Q8IV33 1275 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 FMNL3Q8IVF7 1028 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 NOC4LQ9BVI4 516 aaKnown RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 TSGA10Q9BZW7 698 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 ATP6V0A2Q9Y487 856 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 LAMB4A4D0S4 1761 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 CTAGE9A4FU28 777 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 ABCB5Q2M3G0 1257 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 ZNF658Q5TYW1 1059 aaPredicted RBP8.23□□□□□ -1.09
NPHP3-208ENST00000490993 MSL1Q68DK7 614 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 PAGE5Q96GU1 130 aa8.23□□□□□ -1.09
NPHP3-208ENST00000490993 PNMA6FA0A0J9YX94 578 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 SMARCA1P28370 1054 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 IFI16Q16666 785 aaKnown RBP8.22□□□□□ -1.09
NPHP3-208ENST00000490993 SYT10Q6XYQ8 523 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 TRMT44Q8IYL2 757 aaKnown RBP8.22□□□□□ -1.09
NPHP3-208ENST00000490993 NEK11Q8NG66 645 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 STK17AQ9UEE5 414 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 RGPD5Q99666 1765 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 MYO3BQ8WXR4 1341 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 AKR1B10O60218 316 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 TBC1D8BQ0IIM8 1120 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 SHC4Q6S5L8 630 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 DHTKD1Q96HY7 919 aaPredicted RBP8.22□□□□□ -1.09
NPHP3-208ENST00000490993 PIGSQ96S52 555 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 KCNJ18B7U540 433 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 FAM13AO94988 1023 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 GNA14O95837 355 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 TNFAIP1Q13829 316 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 KCNJ12Q14500 433 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 RTKN2Q8IZC4 609 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 ENGASEQ8NFI3 743 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 DCAF4Q8WV16 495 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 SPZ1Q9BXG8 430 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 VPS16Q9H269 839 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 BARHL2Q9NY43 387 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 DDX25Q9UHL0 483 aaKnown RBP8.22□□□□□ -1.09
NPHP3-208ENST00000490993 RWDD2AQ9UIY3 292 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 FBXO2Q9UK22 296 aaPredicted RBP8.22□□□□□ -1.09
NPHP3-208ENST00000490993 ARFGEF2Q9Y6D5 1785 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 STX10O60499 249 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 TUBBP07437 444 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 TECP42680 631 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 FBXO11Q86XK2 927 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 OXER1Q8TDS5 423 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 GPR101Q96P66 508 aaPredicted RBP8.22□□□□□ -1.09
NPHP3-208ENST00000490993 MPHOSPH6Q99547 160 aaKnown RBP8.22□□□□□ -1.09
NPHP3-208ENST00000490993 AMNQ9BXJ7 453 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 DNM3Q9UQ16 869 aa8.22□□□□□ -1.09
NPHP3-208ENST00000490993 GPR75-ASB3A0A0A6YYF3 556 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 WDHD1O75717 1129 aaPredicted RBP8.21□□□□□ -1.09
NPHP3-208ENST00000490993 HSPA1LP34931 641 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 PAFAH1B1P43034 410 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 ATP2C1P98194 919 aaPredicted RBP8.21□□□□□ -1.09
NPHP3-208ENST00000490993 PPP4R3AQ6IN85 833 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 CCDC84Q86UT8 332 aaPredicted RBP8.21□□□□□ -1.09
NPHP3-208ENST00000490993 SYCP3Q8IZU3 236 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 CCDC42Q96M95 316 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 PYCARDQ9ULZ3 195 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 RIOK3O14730 519 aaKnown RBP8.21□□□□□ -1.09
NPHP3-208ENST00000490993 CDR1P51861 262 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 BMS1Q14692 1282 aaKnown RBP8.21□□□□□ -1.09
NPHP3-208ENST00000490993 C16orf86Q6ZW13 317 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 DHX40Q8IX18 779 aaKnown RBP8.21□□□□□ -1.09
NPHP3-208ENST00000490993 C17orf53Q8N3J3 647 aaPredicted RBP8.21□□□□□ -1.09
NPHP3-208ENST00000490993 PCDHA12Q9UN75 941 aa8.21□□□□□ -1.09
NPHP3-208ENST00000490993 CALUO43852 315 aaPredicted RBP8.21□□□□□ -1.1
NPHP3-208ENST00000490993 NMT2O60551 498 aa8.21□□□□□ -1.1
NPHP3-208ENST00000490993 EEF1GP26641 437 aaKnown RBP8.21□□□□□ -1.1
NPHP3-208ENST00000490993 GUCY1A2P33402 732 aa8.21□□□□□ -1.1
NPHP3-208ENST00000490993 CRKP46108 304 aa8.21□□□□□ -1.1
NPHP3-208ENST00000490993 KIF5AQ12840 1032 aa8.21□□□□□ -1.1
NPHP3-208ENST00000490993 LRMPQ12912 555 aa8.21□□□□□ -1.1
NPHP3-208ENST00000490993 SEPT2Q15019 361 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms