RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 LENG1Q96BZ8 264 aaPredicted RBP14.82□□□□□ -0.04
CPSF3-204ENST00000489403 TEX13BQ9BXU2 312 aa14.82□□□□□ -0.04
CPSF3-204ENST00000489403 CLIP2Q9UDT6 1046 aa14.82□□□□□ -0.04
CPSF3-204ENST00000489403 RIPK3Q9Y572 518 aa14.82□□□□□ -0.04
CPSF3-204ENST00000489403 PRDM1O75626 825 aa14.81□□□□□ -0.04
CPSF3-204ENST00000489403 ZFYP08048 801 aaPredicted RBP14.81□□□□□ -0.04
CPSF3-204ENST00000489403 GNAT2P19087 354 aa14.81□□□□□ -0.04
CPSF3-204ENST00000489403 SHHQ15465 462 aa14.81□□□□□ -0.04
CPSF3-204ENST00000489403 C9orf50Q5SZB4 431 aa14.81□□□□□ -0.04
CPSF3-204ENST00000489403 FAM109BQ6ICB4 259 aaPredicted RBP14.81□□□□□ -0.04
CPSF3-204ENST00000489403 RNF180Q86T96 592 aa14.81□□□□□ -0.04
CPSF3-204ENST00000489403 PRPF38AQ8NAV1 312 aaKnown RBP14.81□□□□□ -0.04
CPSF3-204ENST00000489403 CEP95Q96GE4 821 aa14.81□□□□□ -0.04
CPSF3-204ENST00000489403 GUCD1Q96NT3 240 aa14.81□□□□□ -0.04
CPSF3-204ENST00000489403 DNAJC25-GNG10A0A024R161 153 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 A0A1W2PQ45 241 aaPredicted RBP14.8□□□□□ -0.04
CPSF3-204ENST00000489403 A0A1W2PQY0 241 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 ATP2A1O14983 1001 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 ADAMTS4O75173 837 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 TLE2Q04725 743 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 IFNL3Q8IZI9 196 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 ZNF444Q8N0Y2 327 aaPredicted RBP14.8□□□□□ -0.04
CPSF3-204ENST00000489403 CPXCR1Q8N123 301 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 MSL3Q8N5Y2 521 aaKnown RBP14.8□□□□□ -0.04
CPSF3-204ENST00000489403 FAM161BQ96MY7 647 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 CNPY2Q9Y2B0 182 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 SYNGAP1Q96PV0 1343 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 PLIN4Q96Q06 1357 aa14.8□□□□□ -0.04
CPSF3-204ENST00000489403 PATL2C9JE40 543 aaKnown RBP14.79□□□□□ -0.04
CPSF3-204ENST00000489403 SNAI1O95863 264 aaPredicted RBP14.79□□□□□ -0.04
CPSF3-204ENST00000489403 APPP05067 770 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 ITGB8P26012 769 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 TTC41PQ6P2S7 1318 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 LRRC47Q8N1G4 583 aaKnown RBP14.79□□□□□ -0.04
CPSF3-204ENST00000489403 PI4K2BQ8TCG2 481 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 MKL1Q969V6 931 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 KIFC2Q96AC6 838 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 DDX11Q96FC9 970 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 SEC62Q99442 399 aaKnown RBP14.79□□□□□ -0.04
CPSF3-204ENST00000489403 SLC38A10Q9HBR0 1119 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 ZNF287Q9HBT7 754 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 RAVER2Q9HCJ3 691 aaKnown RBP14.79□□□□□ -0.04
CPSF3-204ENST00000489403 MTMR4Q9NYA4 1195 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 SYNRGQ9UMZ2 1314 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 UNC80Q8N2C7 3258 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 EYSQ5T1H1 3165 aa14.79□□□□□ -0.04
CPSF3-204ENST00000489403 MCM3APO60318 1980 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 ZBED4O75132 1171 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 TTLL1O95922 423 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 CLTBP09497 229 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 SLC4A3P48751 1232 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 ZNF697Q5TEC3 545 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 MAMDC4Q6UXC1 1216 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.78□□□□□ -0.04
CPSF3-204ENST00000489403 GMCL1P1Q8NEA9 526 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 FGD4Q96M96 766 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 FEM1BQ9UK73 627 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 ZHX1Q9UKY1 873 aaPredicted RBP14.78□□□□□ -0.04
CPSF3-204ENST00000489403 FAM184BQ9ULE4 1060 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 SYNPO2Q9UMS6 1093 aa14.78□□□□□ -0.04
CPSF3-204ENST00000489403 PQBP1O60828 265 aaKnown RBP14.77□□□□□ -0.05
CPSF3-204ENST00000489403 LRRFIP1Q32MZ4 808 aaKnown RBP14.77□□□□□ -0.05
CPSF3-204ENST00000489403 ZNF467Q7Z7K2 595 aaPredicted RBP14.77□□□□□ -0.05
CPSF3-204ENST00000489403 KLHDC9Q8NEP7 349 aa14.77□□□□□ -0.05
CPSF3-204ENST00000489403 NEDD1Q8NHV4 660 aa14.77□□□□□ -0.05
CPSF3-204ENST00000489403 OTUD7AQ8TE49 926 aaPredicted RBP14.77□□□□□ -0.05
CPSF3-204ENST00000489403 TSEN34Q9BSV6 310 aaKnown RBP14.77□□□□□ -0.05
CPSF3-204ENST00000489403 CTDP1Q9Y5B0 961 aaPredicted RBP14.77□□□□□ -0.05
CPSF3-204ENST00000489403 PCDHB15Q9Y5E8 787 aa14.77□□□□□ -0.05
CPSF3-204ENST00000489403 TACC3Q9Y6A5 838 aa14.77□□□□□ -0.05
CPSF3-204ENST00000489403 A0A0C4DFX4 3053 aa14.77□□□□□ -0.05
CPSF3-204ENST00000489403 MYADML2A6NDP7 307 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 MOXD2PA6NHM9 499 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 KIAA0355O15063 1070 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 ERC2O15083 957 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 ADCY6O43306 1168 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 TSPY3P0CV98 308 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 TSPY8P0CW00 308 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 BMP3P12645 472 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 ACLYP53396 1101 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 OAZ1P54368 228 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 IRX5P78411 483 aaPredicted RBP14.76□□□□□ -0.05
CPSF3-204ENST00000489403 PDE4BQ07343 736 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 SLFN13Q68D06 897 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 CCSAPQ6IQ19 270 aaPredicted RBP14.76□□□□□ -0.05
CPSF3-204ENST00000489403 ANKRD35Q8N283 1001 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 FSD1Q9BTV5 496 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 NACAP1Q9BZK3 213 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 NAPBQ9H115 298 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 STARD7Q9NQZ5 370 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.76□□□□□ -0.05
CPSF3-204ENST00000489403 CDH23Q9H251 3354 aa14.76□□□□□ -0.05
CPSF3-204ENST00000489403 DUSP11O75319 330 aaKnown RBP14.75□□□□□ -0.05
CPSF3-204ENST00000489403 RAG1P15918 1043 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 CST5P28325 142 aaPredicted RBP14.75□□□□□ -0.05
CPSF3-204ENST00000489403 EPHB4P54760 987 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 SMAD3P84022 425 aaKnown RBP14.75□□□□□ -0.05
CPSF3-204ENST00000489403 TFAP4Q01664 338 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 PPARAQ07869 468 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 FAAP100Q0VG06 881 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms