RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 CHD9Q3L8U1 2897 aa19.55■□□□□ 0.72
USP48-210ENST00000489108 DUSP11O75319 330 aaKnown RBP19.55■□□□□ 0.72
USP48-210ENST00000489108 TTF1Q15361 905 aaPredicted RBP19.55■□□□□ 0.72
USP48-210ENST00000489108 FAM122AQ96E09 287 aa19.55■□□□□ 0.72
USP48-210ENST00000489108 CCDC17Q96LX7 622 aa19.55■□□□□ 0.72
USP48-210ENST00000489108 PPP1R12CQ9BZL4 782 aa19.55■□□□□ 0.72
USP48-210ENST00000489108 MSRAQ9UJ68 235 aa19.55■□□□□ 0.72
USP48-210ENST00000489108 ZHX1Q9UKY1 873 aaPredicted RBP19.55■□□□□ 0.72
USP48-210ENST00000489108 PPP1R9AQ9ULJ8 1098 aa19.55■□□□□ 0.72
USP48-210ENST00000489108 TCF20Q9UGU0 1960 aaKnown RBP19.55■□□□□ 0.72
USP48-210ENST00000489108 MROH7Q68CQ1 1323 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 TCRBV5S4A2TA0A5A2 114 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 ARVCFO00192 962 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 PRKAB2O43741 272 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 RAD21O60216 631 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 ASGR1P07306 291 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 CDK8P49336 464 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 MSL3Q8N5Y2 521 aaKnown RBP19.54■□□□□ 0.72
USP48-210ENST00000489108 ARMT1Q9H993 441 aa19.54■□□□□ 0.72
USP48-210ENST00000489108 SYNGAP1Q96PV0 1343 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 BAZ2AQ9UIF9 1905 aaKnown RBP19.53■□□□□ 0.72
USP48-210ENST00000489108 CYP2D7A0A087X1C5 515 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 C6orf222P0C671 652 aaPredicted RBP19.53■□□□□ 0.72
USP48-210ENST00000489108 COPB2P35606 906 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 FAM83BQ5T0W9 1011 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 ZKSCAN2Q63HK3 967 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 MAMDC4Q6UXC1 1216 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 PCSK9Q8NBP7 692 aaKnown RBP19.53■□□□□ 0.72
USP48-210ENST00000489108 IL27Q8NEV9 243 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 DDX11Q96FC9 970 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 NECAB3Q96P71 396 aaPredicted RBP19.53■□□□□ 0.72
USP48-210ENST00000489108 NKX2-4Q9H2Z4 354 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 CXXC1Q9P0U4 656 aaPredicted RBP19.53■□□□□ 0.72
USP48-210ENST00000489108 EXOC6BQ9Y2D4 811 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 RIPK3Q9Y572 518 aa19.53■□□□□ 0.72
USP48-210ENST00000489108 APBB1O00213 710 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 ADCY6O43306 1168 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 CST5P28325 142 aaPredicted RBP19.52■□□□□ 0.72
USP48-210ENST00000489108 CYP2C18P33260 490 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 ACVR2BQ13705 512 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 RAB30Q15771 203 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 SLFNL1Q499Z3 407 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 PSRC1Q6PGN9 363 aaPredicted RBP19.52■□□□□ 0.72
USP48-210ENST00000489108 HERVK_113Q902F9 699 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 KANSL2Q9H9L4 492 aa19.52■□□□□ 0.72
USP48-210ENST00000489108 BDP1A6H8Y1 2624 aa19.52■□□□□ 0.71
USP48-210ENST00000489108 GBF1Q92538 1859 aa19.52■□□□□ 0.71
USP48-210ENST00000489108 DNAJC25-GNG10A0A024R161 153 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 A0A0U1RQG5 324 aaPredicted RBP19.51■□□□□ 0.71
USP48-210ENST00000489108 GOLIM4O00461 696 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 SLC4A3P48751 1232 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 GNASQ5JWF2 1037 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 C12orf60Q5U649 245 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 FAM126BQ8IXS8 530 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 DNAJC2Q99543 621 aaKnown RBP19.51■□□□□ 0.71
USP48-210ENST00000489108 SLC28A3Q9HAS3 691 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 GOPCQ9HD26 462 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 IL1RAPL2Q9NP60 686 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 IL23AQ9NPF7 189 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 ATP8A2Q9NTI2 1148 aa19.51■□□□□ 0.71
USP48-210ENST00000489108 YBX2Q9Y2T7 364 aaKnown RBP19.51■□□□□ 0.71
USP48-210ENST00000489108 MCM3APO60318 1980 aa19.5■□□□□ 0.71
USP48-210ENST00000489108 USP17L12C9JPN9 530 aa19.5■□□□□ 0.71
USP48-210ENST00000489108 USP17L21D6R901 530 aa19.5■□□□□ 0.71
USP48-210ENST00000489108 TLR3O15455 904 aaKnown RBP19.5■□□□□ 0.71
USP48-210ENST00000489108 FGBP02675 491 aa19.5■□□□□ 0.71
USP48-210ENST00000489108 GJA9P57773 515 aa19.5■□□□□ 0.71
USP48-210ENST00000489108 CCDC144BQ3MJ40 725 aa19.5■□□□□ 0.71
USP48-210ENST00000489108 SNRNP48Q6IEG0 339 aaKnown RBP19.5■□□□□ 0.71
USP48-210ENST00000489108 NUP88Q99567 741 aaPredicted RBP19.5■□□□□ 0.71
USP48-210ENST00000489108 UPF3AQ9H1J1 476 aaKnown RBP19.5■□□□□ 0.71
USP48-210ENST00000489108 SPC25Q9HBM1 224 aa19.5■□□□□ 0.71
USP48-210ENST00000489108 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.5■□□□□ 0.71
USP48-210ENST00000489108 MBD4O95243 580 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 CD4P01730 458 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 BMP1P13497 986 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 C16orf86Q6ZW13 317 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 ERC1Q8IUD2 1116 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 SLF1Q9BQI6 1058 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 TEX13BQ9BXU2 312 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 REV3LO60673 3130 aa19.49■□□□□ 0.71
USP48-210ENST00000489108 CHD7Q9P2D1 2997 aa19.48■□□□□ 0.71
USP48-210ENST00000489108 CEP85Q6P2H3 762 aa19.48■□□□□ 0.71
USP48-210ENST00000489108 OTOP2Q7RTS6 562 aa19.48■□□□□ 0.71
USP48-210ENST00000489108 ZNF467Q7Z7K2 595 aaPredicted RBP19.48■□□□□ 0.71
USP48-210ENST00000489108 CPXCR1Q8N123 301 aa19.48■□□□□ 0.71
USP48-210ENST00000489108 TSPYL2Q9H2G4 693 aaPredicted RBP19.48■□□□□ 0.71
USP48-210ENST00000489108 ABHD16BQ9H3Z7 469 aa19.48■□□□□ 0.71
USP48-210ENST00000489108 CTAGE5O15320 804 aa19.47■□□□□ 0.71
USP48-210ENST00000489108 RABGGTBP53611 331 aa19.47■□□□□ 0.71
USP48-210ENST00000489108 TFF2Q03403 129 aa19.47■□□□□ 0.71
USP48-210ENST00000489108 ITPRIPQ8IWB1 547 aa19.47■□□□□ 0.71
USP48-210ENST00000489108 MICALL1Q8N3F8 863 aa19.47■□□□□ 0.71
USP48-210ENST00000489108 FGD4Q96M96 766 aa19.47■□□□□ 0.71
USP48-210ENST00000489108 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.47■□□□□ 0.71
USP48-210ENST00000489108 MTIF3Q9H2K0 278 aaKnown RBP19.47■□□□□ 0.71
USP48-210ENST00000489108 UMODL1Q5DID0 1318 aa19.47■□□□□ 0.71
USP48-210ENST00000489108 RLBP1P12271 317 aa19.46■□□□□ 0.71
USP48-210ENST00000489108 MYOGP15173 224 aa19.46■□□□□ 0.71
USP48-210ENST00000489108 BEX3Q00994 111 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms