RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 ADGRF4Q8IZF3 695 aa10.84□□□□□ -0.67
SF3B1-211ENST00000487698 JMYQ8N9B5 988 aa10.84□□□□□ -0.67
SF3B1-211ENST00000487698 MRPS27Q92552 414 aaKnown RBP10.84□□□□□ -0.67
SF3B1-211ENST00000487698 GMCL1Q96IK5 515 aa10.84□□□□□ -0.67
SF3B1-211ENST00000487698 NUP62CLQ9H1M0 184 aa10.84□□□□□ -0.67
SF3B1-211ENST00000487698 CLSTN2Q9H4D0 955 aa10.84□□□□□ -0.67
SF3B1-211ENST00000487698 PCDHB6Q9Y5E3 794 aa10.84□□□□□ -0.67
SF3B1-211ENST00000487698 ESYT2A0FGR8 921 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 F5H6K3 240 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 H7C1D1 291 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 NDUFB10O96000 172 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 MARCKSP29966 332 aaPredicted RBP10.83□□□□□ -0.68
SF3B1-211ENST00000487698 CAP2P40123 477 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 TRAPPC10P48553 1259 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 KLRC3Q07444 240 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 CCDC96Q2M329 555 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 L1TD1Q5T7N2 865 aaKnown RBP10.83□□□□□ -0.68
SF3B1-211ENST00000487698 RBM43Q6ZSC3 357 aaKnown RBP10.83□□□□□ -0.68
SF3B1-211ENST00000487698 KCTD1Q719H9 257 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 MIGA2Q7L4E1 593 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 FSIP1Q8NA03 581 aa10.83□□□□□ -0.68
SF3B1-211ENST00000487698 CCDC12Q8WUD4 166 aaPredicted RBP10.83□□□□□ -0.68
SF3B1-211ENST00000487698 FAM237AA0A1B0GTK4 181 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 TRIM75PA6NK02 468 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PHF20L1A8MW92 1017 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 WNT7AO00755 349 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 CMA1P23946 247 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 SLC1A4P43007 532 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 MRE11P49959 708 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 CCDC73Q6ZRK6 1079 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 FMR1NBQ8N0W7 255 aaPredicted RBP10.82□□□□□ -0.68
SF3B1-211ENST00000487698 TRPM4Q8TD43 1214 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 FUCA2Q9BTY2 467 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 GRPEL1Q9HAV7 217 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 VAT1LQ9HCJ6 419 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 NOL7Q9UMY1 257 aaKnown RBP10.82□□□□□ -0.68
SF3B1-211ENST00000487698 SCAF8Q9UPN6 1271 aaKnown RBP10.82□□□□□ -0.68
SF3B1-211ENST00000487698 TMX2Q9Y320 296 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PNMA6FA0A0J9YX94 578 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 CUTAO60888 179 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PPP1R11O60927 126 aaPredicted RBP10.82□□□□□ -0.68
SF3B1-211ENST00000487698 NAPAP54920 295 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PPP1R18Q6NYC8 613 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PIK3AP1Q6ZUJ8 805 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 DEFB129Q9H1M3 183 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 ARHGEF10LQ9HCE6 1279 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 FBXO2Q9UK22 296 aaPredicted RBP10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PCDHA6Q9UN73 950 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 CEP131Q9UPN4 1083 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PCDHA8Q9Y5H6 950 aa10.82□□□□□ -0.68
SF3B1-211ENST00000487698 PHIPQ8WWQ0 1821 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 PAPPA2Q9BXP8 1791 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 USP17L10C9JJH3 530 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 ZBTB5O15062 677 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 ASNSP08243 561 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 PTPREP23469 700 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 SLC16A2P36021 539 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 ECE1P42892 770 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 TTC38Q5R3I4 469 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 RESP18Q5W5W9 173 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 SHC4Q6S5L8 630 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 BTNL9Q6UXG8 535 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 APOBEC3FQ8IUX4 373 aaKnown RBP10.81□□□□□ -0.68
SF3B1-211ENST00000487698 KRI1Q8N9T8 703 aaKnown RBP10.81□□□□□ -0.68
SF3B1-211ENST00000487698 ACER1Q8TDN7 264 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 HPSEQ9Y251 543 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 A0A1B0GVL5 298 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 BMP15O95972 392 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 XRCC6P12956 609 aaKnown RBP eCLIP10.81□□□□□ -0.686e-10■■■■■ 46
SF3B1-211ENST00000487698 GNA11P29992 359 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 EPS15P42566 896 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 NDUFA8P51970 172 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 MAP3K11Q16584 847 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 ANGEL2Q5VTE6 544 aaKnown RBP10.81□□□□□ -0.68
SF3B1-211ENST00000487698 RASGRP4Q8TDF6 673 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 TNMDQ9H2S6 317 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 TSPY26PQ9H489 355 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 C6orf50Q9HD87 102 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 RNF181Q9P0P0 153 aa10.81□□□□□ -0.68
SF3B1-211ENST00000487698 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.81□□□□□ -0.68
SF3B1-211ENST00000487698 SSC5DA1L4H1 1573 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 PARP14Q460N5 1801 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 MYH7BA7E2Y1 1941 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 SMCO2A6NFE2 343 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 BMP3P12645 472 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 PFKFB1P16118 471 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 HIRAP54198 1017 aaPredicted RBP10.8□□□□□ -0.68
SF3B1-211ENST00000487698 CAMK4Q16566 473 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 KIAA1755Q5JYT7 1200 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 ZNF579Q8NAF0 562 aaKnown RBP10.8□□□□□ -0.68
SF3B1-211ENST00000487698 COA7Q96BR5 231 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 CLIC6Q96NY7 704 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 NUP88Q99567 741 aaPredicted RBP10.8□□□□□ -0.68
SF3B1-211ENST00000487698 RBSNQ9H1K0 784 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 GINM1Q9NU53 330 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 SRPRBQ9Y5M8 271 aaKnown RBP10.8□□□□□ -0.68
SF3B1-211ENST00000487698 SMCHD1A6NHR9 2005 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 SRCAPQ6ZRS2 3230 aa10.8□□□□□ -0.68
SF3B1-211ENST00000487698 CCDC194A0A1B0GVG4 234 aa10.79□□□□□ -0.68
SF3B1-211ENST00000487698 RAD21O60216 631 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms