RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 FGFR2P21802 821 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 MORC3Q14149 939 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 VPS72Q15906 364 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 UBE2SQ16763 222 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 ODF2Q5BJF6 829 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 CCDC122Q5T0U0 273 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 PRR5LQ6MZQ0 368 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 PCDHA1Q9Y5I3 950 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 CCDC66A2RUB6 948 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 CTAGE9A4FU28 777 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 RAD17O75943 681 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 ZNF512BQ96KM6 892 aaPredicted RBP14.82□□□□□ -0.04
HMGN1-216ENST00000486741 BCL9O00512 1426 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 USP17L5A8MUK1 530 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 ICA1Q05084 483 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 DLGAP5Q15398 846 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 PRR16Q569H4 304 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 TAF3Q5VWG9 929 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 SLFN13Q68D06 897 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 CERS3Q8IU89 383 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 CEP95Q96GE4 821 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 KCNJ18B7U540 433 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 EVCP57679 992 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 CACNB1Q02641 598 aaPredicted RBP14.82□□□□□ -0.04
HMGN1-216ENST00000486741 KCNJ12Q14500 433 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 PAGE5Q96GU1 130 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 PSMB7Q99436 277 aa14.82□□□□□ -0.04
HMGN1-216ENST00000486741 WDR19Q8NEZ3 1342 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 SPATA1Q5VX52 437 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 PCDHA12Q9UN75 941 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 KNDC1Q76NI1 1749 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 UBXN2AP68543 259 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 CYP4A11Q02928 519 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 ZFP91Q96JP5 570 aaPredicted RBP14.81□□□□□ -0.04
HMGN1-216ENST00000486741 GTPBP6O43824 516 aaPredicted RBP14.81□□□□□ -0.04
HMGN1-216ENST00000486741 KIF5AQ12840 1032 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 TXNRD1Q16881 649 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 ERCC6LQ2NKX8 1250 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 CNNM4Q6P4Q7 775 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 DGKHQ86XP1 1220 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 GDAQ9Y2T3 454 aa14.81□□□□□ -0.04
HMGN1-216ENST00000486741 PAFAH1B1P43034 410 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 NEK11Q8NG66 645 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 EHMT1Q9H9B1 1298 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 NLRC4Q9NPP4 1024 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 FAM13AO94988 1023 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 HSPA1LP34931 641 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 PRPF4BQ13523 1007 aaKnown RBP14.8□□□□□ -0.04
HMGN1-216ENST00000486741 LRRC41Q15345 812 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 DHX40Q8IX18 779 aaKnown RBP14.8□□□□□ -0.04
HMGN1-216ENST00000486741 FMN2Q9NZ56 1722 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 NWD1Q149M9 1564 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 CTAGE15A4D2H0 777 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 CTAGE8P0CG41 777 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 CASP14P31944 242 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 CTAGE6Q86UF2 777 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 CTAGE4Q8IX94 777 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.8□□□□□ -0.04
HMGN1-216ENST00000486741 USP27XA6NNY8 438 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 AP5Z1O43299 807 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 FBXO33Q7Z6M2 555 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 CCDC65Q8IXS2 484 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 CRACR2AQ9BSW2 395 aa14.8□□□□□ -0.04
HMGN1-216ENST00000486741 IKBKBO14920 756 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 SSR1P43307 286 aaKnown RBP14.79□□□□□ -0.04
HMGN1-216ENST00000486741 CUL4BQ13620 913 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 IQCB1Q15051 598 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 BARGINQ6ZT62 677 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 KCNF1Q9H3M0 494 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 MROH7-TTC4A0A0A0MT08 1334 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 LONP1P36776 959 aaKnown RBP14.79□□□□□ -0.04
HMGN1-216ENST00000486741 RAPGEF1Q13905 1077 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 METTL16Q86W50 562 aaKnown RBP14.79□□□□□ -0.04
HMGN1-216ENST00000486741 GSDMAQ96QA5 445 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 CSRNP1Q96S65 589 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 PPP2R2CQ9Y2T4 447 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 EIF3JO75822 258 aaKnown RBP14.79□□□□□ -0.04
HMGN1-216ENST00000486741 TTLL1O95922 423 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 PFKFB3Q16875 520 aaPredicted RBP14.79□□□□□ -0.04
HMGN1-216ENST00000486741 VPS36Q86VN1 386 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 TXLNBQ8N3L3 684 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 TRIML1Q8N9V2 468 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 ARHGEF10LQ9HCE6 1279 aa14.79□□□□□ -0.04
HMGN1-216ENST00000486741 KRT86O43790 486 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 RNASE9P60153 205 aaKnown RBP14.78□□□□□ -0.04
HMGN1-216ENST00000486741 NAA30Q147X3 362 aaPredicted RBP14.78□□□□□ -0.04
HMGN1-216ENST00000486741 C12orf60Q5U649 245 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 DPF2Q92785 391 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 POLD4Q9HCU8 107 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 TMEM260Q9NX78 707 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 DDX25Q9UHL0 483 aaKnown RBP14.78□□□□□ -0.04
HMGN1-216ENST00000486741 STK36Q9NRP7 1315 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 MIGA2Q7L4E1 593 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 PLA2G4DQ86XP0 818 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 ERO1AQ96HE7 468 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 ALS2CR12Q96Q35 445 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 ARFGAP3Q9NP61 516 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.78□□□□□ -0.041e-9■■■■■ 62.2
HMGN1-216ENST00000486741 PPP2R3AQ06190 1150 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 VGLL2Q8N8G2 317 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms