RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 ZNF428Q96B54 188 aa8.64□□□□□ -1.03
SMC4-217ENST00000485867 SHISA4Q96DD7 197 aa8.64□□□□□ -1.03
SMC4-217ENST00000485867 CLMNQ96JQ2 1002 aa8.64□□□□□ -1.03
SMC4-217ENST00000485867 ZFATQ9P243 1243 aa8.64□□□□□ -1.03
SMC4-217ENST00000485867 FZD1Q9UP38 647 aa8.64□□□□□ -1.03
SMC4-217ENST00000485867 COL1A1P02452 1464 aaPredicted RBP8.64□□□□□ -1.03
SMC4-217ENST00000485867 SPEF2Q9C093 1822 aa8.64□□□□□ -1.03
SMC4-217ENST00000485867 ALPK3Q96L96 1907 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 MICAL2O94851 1124 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 SASH1O94885 1247 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 ARSDP51689 593 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 RPS8P62241 208 aaKnown RBP8.63□□□□□ -1.03
SMC4-217ENST00000485867 MAP3K11Q16584 847 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 APOBEC3FQ8IUX4 373 aaKnown RBP8.63□□□□□ -1.03
SMC4-217ENST00000485867 FAM200AQ8TCP9 573 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 XAGE3Q8WTP9 111 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 DPF3Q92784 378 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 CFAP53Q96M91 514 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 C11orf16Q9NQ32 467 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 NUDCQ9Y266 331 aa8.63□□□□□ -1.03
SMC4-217ENST00000485867 A0A1W2PPC1 479 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 WTIPA6NIX2 430 aaPredicted RBP8.62□□□□□ -1.03
SMC4-217ENST00000485867 C9orf172C9J069 976 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 EIF2S2P20042 333 aaKnown RBP8.62□□□□□ -1.03
SMC4-217ENST00000485867 AIMP1Q12904 312 aaKnown RBP8.62□□□□□ -1.03
SMC4-217ENST00000485867 CNGB1Q14028 1251 aaPredicted RBP8.62□□□□□ -1.03
SMC4-217ENST00000485867 C11orf91Q3C1V1 193 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 OTUD7BQ6GQQ9 843 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 COPS6Q7L5N1 327 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 SH3TC2Q8TF17 1288 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 FAM89AQ96GI7 184 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 PTPN18Q99952 460 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 MXD3Q9BW11 206 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 LRFN2Q9ULH4 789 aa8.62□□□□□ -1.03
SMC4-217ENST00000485867 ZBTB42B2RXF5 422 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 RGS9O75916 674 aaPredicted RBP8.61□□□□□ -1.03
SMC4-217ENST00000485867 ADGRE1Q14246 886 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 MBTPS1Q14703 1052 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 ARHGEF6Q15052 776 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 PCSK7Q16549 785 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 DACT2Q5SW24 774 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 UBE2Q1Q7Z7E8 422 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 FAM35AQ86V20 835 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 VTI1AQ96AJ9 217 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 LENG1Q96BZ8 264 aaPredicted RBP8.61□□□□□ -1.03
SMC4-217ENST00000485867 IFT43Q96FT9 208 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 SEC31BQ9NQW1 1179 aa8.61□□□□□ -1.03
SMC4-217ENST00000485867 UNC80Q8N2C7 3258 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 XDHP47989 1333 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 MYO3BQ8WXR4 1341 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 OPLAHO14841 1288 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 DYRK3O43781 588 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 TARSP26639 723 aaKnown RBP8.6□□□□□ -1.03
SMC4-217ENST00000485867 RAC1P63000 192 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 GRIK5Q16478 980 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 DHX32Q7L7V1 743 aaKnown RBP8.6□□□□□ -1.03
SMC4-217ENST00000485867 KRT25Q7Z3Z0 450 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 FMR1NBQ8N0W7 255 aaPredicted RBP8.6□□□□□ -1.03
SMC4-217ENST00000485867 ZBED3Q96IU2 234 aaPredicted RBP8.6□□□□□ -1.03
SMC4-217ENST00000485867 LPIN3Q9BQK8 851 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 ISCA1Q9BUE6 129 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 HTATIP2Q9BUP3 242 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 FRRS1LQ9P0K9 344 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 NOVA2Q9UNW9 492 aaKnown RBP8.6□□□□□ -1.03
SMC4-217ENST00000485867 MYH3P11055 1940 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 MED23Q9ULK4 1368 aa8.6□□□□□ -1.03
SMC4-217ENST00000485867 UNCXA6NJT0 531 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 IRS4O14654 1257 aaPredicted RBP8.59□□□□□ -1.03
SMC4-217ENST00000485867 SASH3O75995 380 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 CPB1P15086 417 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 GPLD1P80108 840 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 FKBP5Q13451 457 aaPredicted RBP8.59□□□□□ -1.03
SMC4-217ENST00000485867 PERM1Q5SV97 790 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 SHISA2Q6UWI4 295 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 DMRTC2Q8IXT2 367 aaPredicted RBP8.59□□□□□ -1.03
SMC4-217ENST00000485867 DEFB129Q9H1M3 183 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 TSPYL4Q9UJ04 414 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 STXBP5LQ9Y2K9 1186 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 NR2E3Q9Y5X4 410 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 TTC28Q96AY4 2481 aa8.59□□□□□ -1.03
SMC4-217ENST00000485867 RARAP10276 462 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 RFX1P22670 979 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 ATP2B4P23634 1241 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 MMP14P50281 582 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 TAF1CQ15572 869 aaPredicted RBP8.58□□□□□ -1.04
SMC4-217ENST00000485867 STRIP1Q5VSL9 837 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 PLBD2Q8NHP8 589 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 BRI3BPQ8WY22 251 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 ARHGAP39Q9C0H5 1083 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 ZFYVE28Q9HCC9 887 aa8.58□□□□□ -1.04
SMC4-217ENST00000485867 MGAMO43451 1857 aa8.57□□□□□ -1.04
SMC4-217ENST00000485867 GJA8P48165 433 aa8.57□□□□□ -1.04
SMC4-217ENST00000485867 IREB2P48200 963 aaKnown RBP8.57□□□□□ -1.04
SMC4-217ENST00000485867 NRG1Q02297 640 aaPredicted RBP8.57□□□□□ -1.04
SMC4-217ENST00000485867 PLAURQ03405 335 aa8.57□□□□□ -1.04
SMC4-217ENST00000485867 NFE2L2Q16236 605 aa8.57□□□□□ -1.04
SMC4-217ENST00000485867 SWI5Q1ZZU3 235 aa8.57□□□□□ -1.04
SMC4-217ENST00000485867 FOXD4L6Q3SYB3 417 aaPredicted RBP8.57□□□□□ -1.04
SMC4-217ENST00000485867 COX20Q5RI15 118 aa8.57□□□□□ -1.04
SMC4-217ENST00000485867 ZMYM1Q5SVZ6 1142 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms