RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 TAF6LQ9Y6J9 622 aa5.96□□□□□ -1.46
VPS50-217ENST00000485140 A0A1W2PQ45 241 aaPredicted RBP5.95□□□□□ -1.46
VPS50-217ENST00000485140 A0A1W2PQY0 241 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 SHISA3A0PJX4 238 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 PRAMEF1O95521 474 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 SYPP08247 313 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 MFAP1P55081 439 aaKnown RBP5.95□□□□□ -1.46
VPS50-217ENST00000485140 ERVFC1P60507 584 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 FANCCQ00597 558 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 AUHQ13825 339 aaKnown RBP5.95□□□□□ -1.46
VPS50-217ENST00000485140 ANKRD39Q53RE8 183 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 TMEM132EQ6IEE7 984 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 ATG14Q6ZNE5 492 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 HOMEZQ8IX15 550 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 EAF1Q96JC9 268 aaPredicted RBP5.95□□□□□ -1.46
VPS50-217ENST00000485140 SP110Q9HB58 689 aa5.95□□□□□ -1.46
VPS50-217ENST00000485140 A0A087WZG4 1122 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 WASH4PA8MWX3 477 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 ZNF205O95201 554 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 C1QTNF9P0C862 333 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 ZNF385BQ569K4 471 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 CYP2R1Q6VVX0 501 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 CEP128Q6ZU80 1094 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 NLRX1Q86UT6 975 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 C7orf61Q8IZ16 206 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 G6PC3Q9BUM1 346 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 DSCC1Q9BVC3 393 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 KRTAP4-5Q9BYR2 181 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 BACH2Q9BYV9 841 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 FOXP3Q9BZS1 431 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 PRDM14Q9GZV8 571 aa5.94□□□□□ -1.46
VPS50-217ENST00000485140 SF3B6Q9Y3B4 125 aaKnown RBP5.94□□□□□ -1.46
VPS50-217ENST00000485140 RTP1P59025 263 aa5.93□□□□□ -1.46
VPS50-217ENST00000485140 TCEAL1Q15170 157 aa5.93□□□□□ -1.46
VPS50-217ENST00000485140 CCDC144CPQ8IYA2 1237 aa5.93□□□□□ -1.46
VPS50-217ENST00000485140 C19orf47Q8N9M1 422 aaKnown RBP5.93□□□□□ -1.46
VPS50-217ENST00000485140 C19orf44Q9H6X5 657 aa5.93□□□□□ -1.46
VPS50-217ENST00000485140 NPIPB6E9PJ23 425 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 ETV2O00321 342 aaPredicted RBP5.92□□□□□ -1.46
VPS50-217ENST00000485140 MPOP05164 745 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 ZSCAN22P10073 491 aaPredicted RBP5.92□□□□□ -1.46
VPS50-217ENST00000485140 GUCY2CP25092 1073 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 CFPP27918 469 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 TRHRP34981 398 aaPredicted RBP5.92□□□□□ -1.46
VPS50-217ENST00000485140 ERVFRD-1P60508 538 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 HLA-DQA1Q5Y7H0 255 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 SPOCD1Q6ZMY3 1216 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 TMC3Q7Z5M5 1100 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 ZNF605Q86T29 641 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 SRRTQ9BXP5 876 aaKnown RBP5.92□□□□□ -1.46
VPS50-217ENST00000485140 SIRT5Q9NXA8 310 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 SMG5Q9UPR3 1016 aaKnown RBP5.92□□□□□ -1.46
VPS50-217ENST00000485140 FHOD1Q9Y613 1164 aa5.92□□□□□ -1.46
VPS50-217ENST00000485140 TMEM82A0PJX8 343 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 ITGA4P13612 1032 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 POLR2BP30876 1174 aaKnown RBP5.91□□□□□ -1.46
VPS50-217ENST00000485140 CORO7P57737 925 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 LINC00310P59036 64 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 DLG4P78352 724 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 NR1I3Q14994 352 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 NOL9Q5SY16 702 aaKnown RBP5.91□□□□□ -1.46
VPS50-217ENST00000485140 CILP2Q8IUL8 1156 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 TMEM192Q8IY95 271 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 HHIPL1Q96JK4 782 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 SLC9A7Q96T83 725 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 PHAXQ9H814 394 aaKnown RBP5.91□□□□□ -1.46
VPS50-217ENST00000485140 DDX41Q9UJV9 622 aaKnown RBP5.91□□□□□ -1.46
VPS50-217ENST00000485140 STRIP2Q9ULQ0 834 aa5.91□□□□□ -1.46
VPS50-217ENST00000485140 A0A1W2PQ27 194 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 A0A1W2PQ64 194 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 A0A1W2PQC6 194 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 A0A1W2PQD8 194 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 FADS2P1A8MWK0 482 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 NUAK1O60285 661 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 NAT2P11245 290 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 VAV1P15498 845 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 POU4F1Q01851 419 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 ADGRF1Q5T601 910 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 NAT16Q8N8M0 369 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 SHISA4Q96DD7 197 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 CDADC1Q9BWV3 514 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 MCOLN1Q9GZU1 580 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 GBP3Q9H0R5 595 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 GFOD1Q9NXC2 390 aa5.9□□□□□ -1.46
VPS50-217ENST00000485140 CNOT6Q9ULM6 557 aaKnown RBP5.9□□□□□ -1.46
VPS50-217ENST00000485140 DIS3Q9Y2L1 958 aaKnown RBP5.9□□□□□ -1.46
VPS50-217ENST00000485140 PSPNO60542 156 aa5.89□□□□□ -1.47
VPS50-217ENST00000485140 USP2O75604 605 aaPredicted RBP5.89□□□□□ -1.47
VPS50-217ENST00000485140 TBC1D8O95759 1140 aa5.89□□□□□ -1.47
VPS50-217ENST00000485140 KRT1P04264 644 aa5.89□□□□□ -1.47
VPS50-217ENST00000485140 YBX1P67809 324 aaKnown RBP5.89□□□□□ -1.47
VPS50-217ENST00000485140 TCERG1LQ5VWI1 586 aa5.89□□□□□ -1.47
VPS50-217ENST00000485140 RASGRP4Q8TDF6 673 aa5.89□□□□□ -1.47
VPS50-217ENST00000485140 SIGLEC10Q96LC7 697 aa5.89□□□□□ -1.47
VPS50-217ENST00000485140 TRBV23OR9-2A0A075B6M9 112 aa5.88□□□□□ -1.47
VPS50-217ENST00000485140 FKTNO75072 461 aa5.88□□□□□ -1.47
VPS50-217ENST00000485140 SOX9P48436 509 aa5.88□□□□□ -1.47
VPS50-217ENST00000485140 EIF6P56537 245 aaKnown RBP5.88□□□□□ -1.47
VPS50-217ENST00000485140 CYP4F8P98187 520 aa5.88□□□□□ -1.47
VPS50-217ENST00000485140 TIGD5Q53EQ6 642 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms