RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 PIGSQ96S52 555 aa30.05■■■□□ 2.4
SHOX2-204ENST00000483851 UBA5Q9GZZ9 404 aa30.05■■■□□ 2.4
SHOX2-204ENST00000483851 KINO60870 393 aaKnown RBP30.04■■■□□ 2.4
SHOX2-204ENST00000483851 TYW1BQ6NUM6 668 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 FMR1NBQ8N0W7 255 aaPredicted RBP30.04■■■□□ 2.4
SHOX2-204ENST00000483851 MTMR8Q96EF0 704 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 C6orf50Q9HD87 102 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 GPCPD1Q9NPB8 672 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 PCDHB6Q9Y5E3 794 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 SHTN1A0MZ66 631 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 MARCKSP29966 332 aaPredicted RBP30.04■■■□□ 2.4
SHOX2-204ENST00000483851 NAPAP54920 295 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 CCDC96Q2M329 555 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 PPP1R18Q6NYC8 613 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 ZNF579Q8NAF0 562 aaKnown RBP30.04■■■□□ 2.4
SHOX2-204ENST00000483851 CPVLQ9H3G5 476 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 ARHGEF10LQ9HCE6 1279 aa30.04■■■□□ 2.4
SHOX2-204ENST00000483851 PNMA6FA0A0J9YX94 578 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 H7C1D1 291 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 PTPREP23469 700 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 SLC1A4P43007 532 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 RASA3Q14644 834 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 RRP1BQ14684 758 aaKnown RBP30.03■■■□□ 2.4
SHOX2-204ENST00000483851 GPC2Q8N158 579 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 FUCA2Q9BTY2 467 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 ZNF541Q9H0D2 1346 aa30.03■■■□□ 2.4
SHOX2-204ENST00000483851 EARS2Q5JPH6 523 aaKnown RBP30.02■■■□□ 2.4
SHOX2-204ENST00000483851 HOMER1Q86YM7 354 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 JMJD4Q9H9V9 463 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 VAT1LQ9HCJ6 419 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 GINM1Q9NU53 330 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 F5H6K3 240 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 KLRC3Q07444 240 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 SHROOM1Q2M3G4 852 aaPredicted RBP30.02■■■□□ 2.4
SHOX2-204ENST00000483851 HS1BP3Q53T59 392 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 ADGRF4Q8IZF3 695 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 ZBTB21Q9ULJ3 1066 aa30.02■■■□□ 2.4
SHOX2-204ENST00000483851 SRPRBQ9Y5M8 271 aaKnown RBP30.02■■■□□ 2.4
SHOX2-204ENST00000483851 SBF1O95248 1867 aa30.01■■■□□ 2.4
SHOX2-204ENST00000483851 CCDC192P0DO97 292 aa30.01■■■□□ 2.39
SHOX2-204ENST00000483851 JAG1P78504 1218 aa30.01■■■□□ 2.39
SHOX2-204ENST00000483851 KIF4BQ2VIQ3 1234 aa30.01■■■□□ 2.39
SHOX2-204ENST00000483851 TTC38Q5R3I4 469 aa30.01■■■□□ 2.39
SHOX2-204ENST00000483851 CAP2P40123 477 aa30■■■□□ 2.39
SHOX2-204ENST00000483851 RESP18Q5W5W9 173 aa30■■■□□ 2.39
SHOX2-204ENST00000483851 PIK3AP1Q6ZUJ8 805 aa30■■■□□ 2.39
SHOX2-204ENST00000483851 CCDC194A0A1B0GVG4 234 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 NDUFA8P51970 172 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 TIGD1Q96MW7 591 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 TEPSINQ96N21 525 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 FBXO2Q9UK22 296 aaPredicted RBP29.99■■■□□ 2.39
SHOX2-204ENST00000483851 PCDHA6Q9UN73 950 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 HPSEQ9Y251 543 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 TMX2Q9Y320 296 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 PCDHA8Q9Y5H6 950 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 GOLGB1Q14789 3259 aaKnown RBP29.99■■■□□ 2.39
SHOX2-204ENST00000483851 A0A1B0GVL5 298 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 FAM205CA6NFA0 338 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 SMCO2A6NFE2 343 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 ZBTB5O15062 677 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 EGFRP00533 1210 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 SAMD7Q7Z3H4 446 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 FERMT2Q96AC1 680 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 SH2D4AQ9H788 454 aa29.99■■■□□ 2.39
SHOX2-204ENST00000483851 CAMK4Q16566 473 aa29.98■■■□□ 2.39
SHOX2-204ENST00000483851 SHC4Q6S5L8 630 aa29.98■■■□□ 2.39
SHOX2-204ENST00000483851 KCTD1Q719H9 257 aa29.98■■■□□ 2.39
SHOX2-204ENST00000483851 KRT25Q7Z3Z0 450 aa29.98■■■□□ 2.39
SHOX2-204ENST00000483851 RNF214Q8ND24 703 aa29.98■■■□□ 2.39
SHOX2-204ENST00000483851 SYT17Q9BSW7 474 aa29.98■■■□□ 2.39
SHOX2-204ENST00000483851 NDUFB10O96000 172 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 ASNSP08243 561 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 PFKFB1P16118 471 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 UVSSAQ2YD98 709 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 TBC1D10BQ4KMP7 808 aaPredicted RBP29.97■■■□□ 2.39
SHOX2-204ENST00000483851 TTBK2Q6IQ55 1244 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 GPRC5DQ9NZD1 345 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 HOOK2Q96ED9 719 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 HACL1Q9UJ83 578 aa29.97■■■□□ 2.39
SHOX2-204ENST00000483851 BTNL9Q6UXG8 535 aa29.96■■■□□ 2.39
SHOX2-204ENST00000483851 APOBEC3FQ8IUX4 373 aaKnown RBP29.96■■■□□ 2.39
SHOX2-204ENST00000483851 GLT8D2Q9H1C3 349 aa29.96■■■□□ 2.39
SHOX2-204ENST00000483851 GOPCQ9HD26 462 aa29.96■■■□□ 2.39
SHOX2-204ENST00000483851 BMP3P12645 472 aa29.95■■■□□ 2.39
SHOX2-204ENST00000483851 ATP2B1P20020 1258 aa29.95■■■□□ 2.39
SHOX2-204ENST00000483851 ATP2C1P98194 919 aaPredicted RBP29.95■■■□□ 2.39
SHOX2-204ENST00000483851 CDAN1Q8IWY9 1227 aa29.95■■■□□ 2.39
SHOX2-204ENST00000483851 A0A1W2PRG0 241 aa29.95■■■□□ 2.38
SHOX2-204ENST00000483851 ZNF202O95125 648 aa29.95■■■□□ 2.38
SHOX2-204ENST00000483851 MIGA2Q7L4E1 593 aa29.95■■■□□ 2.38
SHOX2-204ENST00000483851 FAM13BQ9NYF5 915 aa29.95■■■□□ 2.38
SHOX2-204ENST00000483851 SYKP43405 635 aa29.94■■■□□ 2.38
SHOX2-204ENST00000483851 NOM1Q5C9Z4 860 aaKnown RBP29.94■■■□□ 2.38
SHOX2-204ENST00000483851 DEFB129Q9H1M3 183 aa29.94■■■□□ 2.38
SHOX2-204ENST00000483851 PHF20L1A8MW92 1017 aa29.93■■■□□ 2.38
SHOX2-204ENST00000483851 USP17L10C9JJH3 530 aa29.93■■■□□ 2.38
SHOX2-204ENST00000483851 CAVIN2O95810 425 aa29.93■■■□□ 2.38
SHOX2-204ENST00000483851 ORC2Q13416 577 aaPredicted RBP29.93■■■□□ 2.38
SHOX2-204ENST00000483851 ARL6IP4Q66PJ3 421 aaKnown RBP29.93■■■□□ 2.38
SHOX2-204ENST00000483851 ELOA2Q8IYF1 753 aaPredicted RBP29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms