RNA–Protein interactions for RNA: ENST00000483275.1

VARS-226, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-226ENST00000483275 LRRC47Q8N1G4 583 aaKnown RBP16.66■□□□□ 0.26
VARS-226ENST00000483275 SLF1Q9BQI6 1058 aa16.66■□□□□ 0.26
VARS-226ENST00000483275 MKNK2Q9HBH9 465 aa16.66■□□□□ 0.26
VARS-226ENST00000483275 LRRC37A2A6NM11 1700 aa16.65■□□□□ 0.26
VARS-226ENST00000483275 MYADML2A6NDP7 307 aa16.65■□□□□ 0.26
VARS-226ENST00000483275 KBTBD3Q8NAB2 608 aa16.65■□□□□ 0.26
VARS-226ENST00000483275 KIFC2Q96AC6 838 aa16.65■□□□□ 0.26
VARS-226ENST00000483275 CLIP2Q9UDT6 1046 aa16.65■□□□□ 0.26
VARS-226ENST00000483275 ZHX1Q9UKY1 873 aaPredicted RBP16.65■□□□□ 0.26
VARS-226ENST00000483275 SYNRGQ9UMZ2 1314 aa16.65■□□□□ 0.26
VARS-226ENST00000483275 F5H6K3 240 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 GPAA1O43292 621 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 ADCY6O43306 1168 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 CLTBP09497 229 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 TDO2P48775 406 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 KLRC3Q07444 240 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 RNF180Q86T96 592 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.64■□□□□ 0.252e-6■■■■□ 25.6
VARS-226ENST00000483275 APPBP2Q92624 585 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 CDX2Q99626 313 aaPredicted RBP16.64■□□□□ 0.25
VARS-226ENST00000483275 TEX13BQ9BXU2 312 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 TTYH1Q9H313 450 aaPredicted RBP16.64■□□□□ 0.25
VARS-226ENST00000483275 RAVER2Q9HCJ3 691 aaKnown RBP16.64■□□□□ 0.25
VARS-226ENST00000483275 HOMER2Q9NSB8 354 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 CNPY2Q9Y2B0 182 aa16.64■□□□□ 0.25
VARS-226ENST00000483275 SPTBN5Q9NRC6 3674 aaKnown RBP16.64■□□□□ 0.25
VARS-226ENST00000483275 LCTP09848 1927 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 IGKV6D-41A0A0C4DH26 115 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 ADAMTS4O75173 837 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 SNAI1O95863 264 aaPredicted RBP16.63■□□□□ 0.25
VARS-226ENST00000483275 APPP05067 770 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 AKR1A1P14550 325 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 SBK1Q52WX2 424 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 FAM109BQ6ICB4 259 aaPredicted RBP16.63■□□□□ 0.25
VARS-226ENST00000483275 OTUD7AQ8TE49 926 aaPredicted RBP16.63■□□□□ 0.25
VARS-226ENST00000483275 MYLIPQ8WY64 445 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 CEP95Q96GE4 821 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 SEC62Q99442 399 aaKnown RBP16.63■□□□□ 0.25
VARS-226ENST00000483275 COL25A1Q9BXS0 654 aaPredicted RBP16.63■□□□□ 0.25
VARS-226ENST00000483275 NYAP2Q9P242 653 aa16.63■□□□□ 0.25
VARS-226ENST00000483275 ISY1Q9ULR0 285 aaKnown RBP16.63■□□□□ 0.25
VARS-226ENST00000483275 CHD9Q3L8U1 2897 aa16.62■□□□□ 0.25
VARS-226ENST00000483275 RNF113AO15541 343 aaKnown RBP16.62■□□□□ 0.25
VARS-226ENST00000483275 ACLYP53396 1101 aa16.62■□□□□ 0.25
VARS-226ENST00000483275 RASGRP2Q7LDG7 609 aa16.62■□□□□ 0.25
VARS-226ENST00000483275 DDX11Q96FC9 970 aa16.62■□□□□ 0.25
VARS-226ENST00000483275 RNPC3Q96LT9 517 aaKnown RBP16.62■□□□□ 0.25
VARS-226ENST00000483275 FGD4Q96M96 766 aa16.62■□□□□ 0.25
VARS-226ENST00000483275 NRBP1Q9UHY1 535 aa16.62■□□□□ 0.25
VARS-226ENST00000483275 DDX49Q9Y6V7 483 aaKnown RBP16.62■□□□□ 0.25
VARS-226ENST00000483275 DNAJC25-GNG10A0A024R161 153 aa16.61■□□□□ 0.25
VARS-226ENST00000483275 PTGS1P23219 599 aa16.61■□□□□ 0.25
VARS-226ENST00000483275 COPB2P35606 906 aa16.61■□□□□ 0.25
VARS-226ENST00000483275 C1orf53Q5VUE5 145 aa16.61■□□□□ 0.25
VARS-226ENST00000483275 SEMA6BQ9H3T3 888 aa16.61■□□□□ 0.25
VARS-226ENST00000483275 CHMP4BQ9H444 224 aaKnown RBP16.61■□□□□ 0.25
VARS-226ENST00000483275 DIS3Q9Y2L1 958 aaKnown RBP16.61■□□□□ 0.25
VARS-226ENST00000483275 RAG1P15918 1043 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 FAAP100Q0VG06 881 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 KCNA10Q16322 511 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 PRPF38AQ8NAV1 312 aaKnown RBP16.6■□□□□ 0.25
VARS-226ENST00000483275 MAFAQ8NHW3 353 aaPredicted RBP16.6■□□□□ 0.25
VARS-226ENST00000483275 GPATCH3Q96I76 525 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 STARD7Q9NQZ5 370 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 TMEM39AQ9NV64 488 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 MTMR4Q9NYA4 1195 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 CTDP1Q9Y5B0 961 aaPredicted RBP16.6■□□□□ 0.25
VARS-226ENST00000483275 TACC3Q9Y6A5 838 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 SYNGAP1Q96PV0 1343 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 TTC28Q96AY4 2481 aa16.6■□□□□ 0.25
VARS-226ENST00000483275 GBF1Q92538 1859 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 KIAA0355O15063 1070 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 ZBED4O75132 1171 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 SNAP25P60880 206 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 CNTN2Q02246 1040 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 FPGSQ05932 587 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 GIMAP6Q6P9H5 292 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 DCTPP1Q9H773 170 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 SLC38A10Q9HBR0 1119 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.59■□□□□ 0.25
VARS-226ENST00000483275 FAM184BQ9ULE4 1060 aa16.59■□□□□ 0.25
VARS-226ENST00000483275 C6orf222P0C671 652 aaPredicted RBP16.58■□□□□ 0.24
VARS-226ENST00000483275 SMAD3P84022 425 aaKnown RBP16.58■□□□□ 0.24
VARS-226ENST00000483275 CCDC144BQ3MJ40 725 aa16.58■□□□□ 0.24
VARS-226ENST00000483275 SLFN13Q68D06 897 aa16.58■□□□□ 0.24
VARS-226ENST00000483275 CCSAPQ6IQ19 270 aaPredicted RBP16.58■□□□□ 0.24
VARS-226ENST00000483275 CCDC129Q6ZRS4 1044 aa16.58■□□□□ 0.24
VARS-226ENST00000483275 IFNL3Q8IZI9 196 aa16.58■□□□□ 0.24
VARS-226ENST00000483275 ZNF444Q8N0Y2 327 aaPredicted RBP16.58■□□□□ 0.24
VARS-226ENST00000483275 ANKRD35Q8N283 1001 aa16.58■□□□□ 0.24
VARS-226ENST00000483275 KLHDC9Q8NEP7 349 aa16.58■□□□□ 0.24
VARS-226ENST00000483275 PLIN4Q96Q06 1357 aa16.58■□□□□ 0.24
VARS-226ENST00000483275 MYO9BQ13459 2157 aa16.57■□□□□ 0.24
VARS-226ENST00000483275 TMEM232C9JQI7 657 aa16.57■□□□□ 0.24
VARS-226ENST00000483275 TTLL1O95922 423 aa16.57■□□□□ 0.24
VARS-226ENST00000483275 TSPY3P0CV98 308 aa16.57■□□□□ 0.24
VARS-226ENST00000483275 TSPY8P0CW00 308 aa16.57■□□□□ 0.24
VARS-226ENST00000483275 ACVR2BQ13705 512 aa16.57■□□□□ 0.24
VARS-226ENST00000483275 MAMDC4Q6UXC1 1216 aa16.57■□□□□ 0.24
VARS-226ENST00000483275 ARMCX2Q7L311 632 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms