RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 DCAF8Q5TAQ9 597 aa12.52□□□□□ -0.4
HLA-DMB-260ENST00000477537 C4orf32Q8N8J7 132 aa12.52□□□□□ -0.4
HLA-DMB-260ENST00000477537 TMX4Q9H1E5 349 aaPredicted RBP12.52□□□□□ -0.4
HLA-DMB-260ENST00000477537 NFE2L3Q9Y4A8 694 aa12.52□□□□□ -0.4
HLA-DMB-260ENST00000477537 USP27XA6NNY8 438 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 TNNT1P13805 278 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 SCNN1DP51172 638 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 NAPAP54920 295 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 DHX8Q14562 1220 aaKnown RBP12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 E2F4Q16254 413 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 INF2Q27J81 1249 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 ARL6IP4Q66PJ3 421 aaKnown RBP12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 IQUBQ8NA54 791 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 RRP36Q96EU6 259 aaKnown RBP12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 MASTLQ96GX5 879 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 VAT1LQ9HCJ6 419 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 DDX4Q9NQI0 724 aaKnown RBP12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 USP40Q9NVE5 1235 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 ADAMTSL1Q8N6G6 1762 aa12.52□□□□□ -0.41
HLA-DMB-260ENST00000477537 USP17L5A8MUK1 530 aa12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 TMEM232C9JQI7 657 aa12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 CDK11BP21127 795 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 LONP1P36776 959 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 NOVP48745 357 aa12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 RBM10P98175 930 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 PDXDC2PQ6P474 469 aa12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 HOMER1Q86YM7 354 aa12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 VSTM4Q8IW00 320 aa12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 STAMQ92783 540 aa12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 PYM1Q9BRP8 204 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 SEC63Q9UGP8 760 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-260ENST00000477537 RIOK3O14730 519 aaKnown RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 AKR1B1P15121 316 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 ZNF18P17022 549 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 ERCC5P28715 1186 aaPredicted RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 GABPAQ06546 454 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 FAM177A1Q8N128 213 aaPredicted RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 CCAR2Q8N163 923 aaKnown RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 CCDC12Q8WUD4 166 aaPredicted RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 ZNF622Q969S3 477 aaKnown RBP eCLIP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 GSDMAQ96QA5 445 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 MED15Q96RN5 788 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 TRMT1Q9NXH9 659 aaKnown RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 PLIN4Q96Q06 1357 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 NRDCO43847 1150 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 CD44P16070 742 aaKnown RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 SMARCA1P28370 1054 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 GTF2F1P35269 517 aaKnown RBP eCLIP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 TXLNAP40222 546 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 PTPN21Q16825 1174 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 CT47A1Q5JQC4 288 aaPredicted RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 FRMPD2Q68DX3 1309 aaPredicted RBP12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 KLHL10Q6JEL2 608 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 DTHD1Q6ZMT9 781 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 PIGSQ96S52 555 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 UBA5Q9GZZ9 404 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 ZMYND12Q9H0C1 365 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 BLZF1Q9H2G9 400 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 TMEM60Q9H2L4 133 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 C6orf50Q9HD87 102 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 INTS13Q9NVM9 706 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 MTMR4Q9NYA4 1195 aa12.5□□□□□ -0.41
HLA-DMB-260ENST00000477537 SMCO2A6NFE2 343 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 GTPBP6O43824 516 aaPredicted RBP12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 CDC25AP30304 524 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 EIF6P56537 245 aaKnown RBP12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 STX17P56962 302 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 CUL4BQ13620 913 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 SOGA3Q5TF21 947 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 CDC42EP5Q6NZY7 148 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 KRT25Q7Z3Z0 450 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 SMYD4Q8IYR2 804 aaPredicted RBP12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 LRRC47Q8N1G4 583 aaKnown RBP12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 KCND1Q9NSA2 647 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 SAMSN1Q9NSI8 373 aaKnown RBP12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 SYNRGQ9UMZ2 1314 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 IGKV6D-41A0A0C4DH26 115 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 PPP1R3GB7ZBB8 358 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 PDHBP11177 359 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 GNA11P29992 359 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 KARSQ15046 597 aaKnown RBP12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 CEP135Q66GS9 1140 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 HHIPL2Q6UWX4 724 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 C2CD5Q86YS7 1000 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 CLEC10AQ8IUN9 316 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 SLC16A10Q8TF71 515 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 TSC1Q92574 1164 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 TEKT1Q969V4 418 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 DBNDD1Q9H9R9 158 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 SWAP70Q9UH65 585 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 SERPINB13Q9UIV8 391 aa12.49□□□□□ -0.41
HLA-DMB-260ENST00000477537 STAT6P42226 847 aa12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 GOLGA8FQ08AF8 430 aa12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 GOLGA8DPQ0D2H9 430 aa12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 NONOQ15233 471 aaKnown RBP eCLIP12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 PTPN14Q15678 1187 aa12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 ASPRV1Q53RT3 343 aa12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 SPATA1Q5VX52 437 aa12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 E4F1Q66K89 784 aaPredicted RBP12.48□□□□□ -0.41
HLA-DMB-260ENST00000477537 APOBEC3HQ6NTF7 200 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms