RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ZNF658Q5TYW1 1059 aaPredicted RBP16.3■□□□□ 0.2
HDAC6-220ENST00000477528 MCTP2Q6DN12 878 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 FMNL3Q8IVF7 1028 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 TAOK3Q9H2K8 898 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 EFCAB8A8MWE9 144 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 CALUO43852 315 aaPredicted RBP16.3■□□□□ 0.2
HDAC6-220ENST00000477528 PRDX5P30044 214 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 PRPHP41219 470 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 SAMSN1Q9NSI8 373 aaKnown RBP16.3■□□□□ 0.2
HDAC6-220ENST00000477528 CASP7P55210 303 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 MAATS1Q7Z4T9 603 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 SMYD4Q8IYR2 804 aaPredicted RBP16.3■□□□□ 0.2
HDAC6-220ENST00000477528 IGDCC4Q8TDY8 1250 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 hCG_1984214I3L0E3 225 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 DHX40Q8IX18 779 aaKnown RBP16.3■□□□□ 0.2
HDAC6-220ENST00000477528 ZNF713Q8N859 430 aaPredicted RBP16.3■□□□□ 0.2
HDAC6-220ENST00000477528 DCP1AQ9NPI6 582 aaPredicted RBP16.3■□□□□ 0.2
HDAC6-220ENST00000477528 SH3GLB2Q9NR46 395 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 NWD1Q149M9 1564 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 FDPSP14324 419 aaKnown RBP16.29■□□□□ 0.2
HDAC6-220ENST00000477528 CASP14P31944 242 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 ARID5BQ14865 1188 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 TBC1D9BQ66K14 1250 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 SUPT20HQ8NEM7 779 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 GOPCQ9HD26 462 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 PCDHA12Q9UN75 941 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.29■□□□□ 0.2
HDAC6-220ENST00000477528 OPA1O60313 960 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 MAGEA1P43355 309 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 GABPB1Q06547 395 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-220ENST00000477528 SWAP70Q9UH65 585 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 EEF1GP26641 437 aaKnown RBP16.29■□□□□ 0.2
HDAC6-220ENST00000477528 TAX1BP1Q86VP1 789 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 OSBPL5Q9H0X9 879 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-220ENST00000477528 NUCKS1Q9H1E3 243 aaKnown RBP16.29■□□□□ 0.2
HDAC6-220ENST00000477528 PHLPP2Q6ZVD8 1323 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 A0A0G2JLW4 131 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 CAMTA2O94983 1202 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 SCNN1DP51172 638 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 SHC4Q6S5L8 630 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 MYOCDQ8IZQ8 938 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 OXER1Q8TDS5 423 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 FAM84BQ96KN1 310 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-220ENST00000477528 RWDD2AQ9UIY3 292 aa16.29■□□□□ 0.2
HDAC6-220ENST00000477528 PLEKHG2Q9H7P9 1386 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 PPEF1O14829 653 aaPredicted RBP16.28■□□□□ 0.2
HDAC6-220ENST00000477528 GNA14O95837 355 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 GOLGA8FQ08AF8 430 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 GOLGA8DPQ0D2H9 430 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 CCDC144BQ3MJ40 725 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 GPATCH4Q5T3I0 446 aaKnown RBP16.28■□□□□ 0.2
HDAC6-220ENST00000477528 NLGN1Q8N2Q7 840 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 BICD1Q96G01 975 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 DHTKD1Q96HY7 919 aaPredicted RBP16.28■□□□□ 0.2
HDAC6-220ENST00000477528 FAM207AQ9NSI2 230 aaPredicted RBP16.28■□□□□ 0.2
HDAC6-220ENST00000477528 FRMD4BQ9Y2L6 1034 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 VAV2P52735 878 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 PFKFB3Q16875 520 aaPredicted RBP16.28■□□□□ 0.2
HDAC6-220ENST00000477528 USH1GQ495M9 461 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 FAM182BQ5T319 152 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 FLAD1Q8NFF5 587 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 CCDC17Q96LX7 622 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 TBC1D7Q9P0N9 293 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 USP17L3A6NCW0 530 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 USP17L4A6NCW7 530 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 CYP2D6P10635 497 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 DOK7Q18PE1 504 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 WHAMMP3Q1A5X7 153 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 USP17L1Q7RTZ2 530 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 IL17RAQ96F46 866 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 NOX5Q96PH1 765 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 IQCB1Q15051 598 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 NELFCDQ8IXH7 590 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 HAUS4Q9H6D7 363 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 VPS18Q9P253 973 aa16.28■□□□□ 0.2
HDAC6-220ENST00000477528 DDX25Q9UHL0 483 aaKnown RBP16.28■□□□□ 0.2
HDAC6-220ENST00000477528 TRPC5Q9UL62 973 aaPredicted RBP16.28■□□□□ 0.2
HDAC6-220ENST00000477528 RBL2Q08999 1139 aa16.27■□□□□ 0.2
HDAC6-220ENST00000477528 ASIC2Q16515 512 aa16.27■□□□□ 0.2
HDAC6-220ENST00000477528 KIAA0753Q2KHM9 967 aa16.27■□□□□ 0.2
HDAC6-220ENST00000477528 BCCIPQ9P287 314 aaKnown RBP eCLIP16.27■□□□□ 0.2
HDAC6-220ENST00000477528 CHMP2AO43633 222 aa16.27■□□□□ 0.2
HDAC6-220ENST00000477528 JDP2Q8WYK2 163 aa16.27■□□□□ 0.2
HDAC6-220ENST00000477528 FAM107BQ9H098 131 aa16.27■□□□□ 0.2
HDAC6-220ENST00000477528 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.27■□□□□ 0.2
HDAC6-220ENST00000477528 TNNC1P63316 161 aa16.27■□□□□ 0.19
HDAC6-220ENST00000477528 SF3B3Q15393 1217 aaKnown RBP16.27■□□□□ 0.19
HDAC6-220ENST00000477528 PTPN21Q16825 1174 aa16.27■□□□□ 0.19
HDAC6-220ENST00000477528 PLVAPQ9BX97 442 aa16.27■□□□□ 0.19
HDAC6-220ENST00000477528 IGSF3O75054 1194 aa16.26■□□□□ 0.19
HDAC6-220ENST00000477528 TTLL1O95922 423 aa16.26■□□□□ 0.19
HDAC6-220ENST00000477528 CERKLQ49MI3 558 aaPredicted RBP16.26■□□□□ 0.19
HDAC6-220ENST00000477528 EPN1Q9Y6I3 576 aaPredicted RBP16.26■□□□□ 0.19
HDAC6-220ENST00000477528 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.26■□□□□ 0.19
HDAC6-220ENST00000477528 KCNQ2O43526 872 aa16.26■□□□□ 0.19
HDAC6-220ENST00000477528 ORC4O43929 436 aa16.26■□□□□ 0.19
HDAC6-220ENST00000477528 RRAGAQ7L523 313 aa16.26■□□□□ 0.19
HDAC6-220ENST00000477528 PIGSQ96S52 555 aa16.26■□□□□ 0.19
HDAC6-220ENST00000477528 IFIH1Q9BYX4 1025 aaKnown RBP16.26■□□□□ 0.19
HDAC6-220ENST00000477528 SLC39A2Q9NP94 309 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms