RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CCNA1P78396 465 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 MORN1Q5T089 497 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 CPXCR1Q8N123 301 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 IGDCC4Q8TDY8 1250 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 USP6NLQ92738 828 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 KAT14Q9H8E8 782 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 SLC38A10Q9HBR0 1119 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 RAVER2Q9HCJ3 691 aaKnown RBP11.38□□□□□ -0.59
HDAC3-208ENST00000476739 PRR12Q9ULL5 1215 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 RIPK3Q9Y572 518 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 SMCHD1A6NHR9 2005 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 ZNF536O15090 1300 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 IFIT3O14879 490 aaKnown RBP11.37□□□□□ -0.59
HDAC3-208ENST00000476739 PRC1O43663 620 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 ADCY3O60266 1144 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 PLA2G6O60733 806 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 PTPREP23469 700 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 HSPA4P34932 840 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 STAT3P40763 770 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 SLC4A3P48751 1232 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 ZNF543Q08ER8 600 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 TRIM32Q13049 653 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 IKQ13123 557 aaPredicted RBP11.37□□□□□ -0.59
HDAC3-208ENST00000476739 IRF5Q13568 498 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 SLC9C1Q4G0N8 1177 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 CCDC178Q5BJE1 867 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 IFIT1BQ5T764 474 aaKnown RBP11.37□□□□□ -0.59
HDAC3-208ENST00000476739 BTNL9Q6UXG8 535 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 FAM160B2Q86V87 743 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 NCAPG2Q86XI2 1143 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 RIOX2Q8IUF8 465 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 CCAR1Q8IX12 1150 aaKnown RBP11.37□□□□□ -0.59
HDAC3-208ENST00000476739 KCNB2Q92953 911 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 ARMC5Q96C12 935 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 TCEANC2Q96MN5 208 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 NUDT12Q9BQG2 462 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 LRRC2Q9BYS8 371 aa11.37□□□□□ -0.59
HDAC3-208ENST00000476739 ATP2A1O14983 1001 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 ZBED4O75132 1171 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 CPA1P15085 419 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 GRK4P32298 578 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 GRB14Q14449 540 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 WTAPQ15007 396 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 MTFR1Q15390 333 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 CCL14Q16627 93 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 TSGA10IPQ3SY00 556 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 TMEM67Q5HYA8 995 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 IFFO2Q5TF58 517 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 SNRNP48Q6IEG0 339 aaKnown RBP11.36□□□□□ -0.59
HDAC3-208ENST00000476739 CCDC174Q6PII3 467 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 STAG2Q8N3U4 1231 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 SHCBP1Q8NEM2 672 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 NPLOC4Q8TAT6 608 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 CHURC1Q8WUH1 139 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 TRIB2Q92519 343 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 ZNF333Q96JL9 665 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 AGBL1Q96MI9 1066 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 USP26Q9BXU7 913 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 UBA5Q9GZZ9 404 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 LY9Q9HBG7 655 aa11.36□□□□□ -0.59
HDAC3-208ENST00000476739 ZNFX1Q9P2E3 1918 aaKnown RBP11.36□□□□□ -0.59
HDAC3-208ENST00000476739 CENPFP49454 3210 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 SLC15A5A6NIM6 579 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 SH2B2O14492 632 aaPredicted RBP11.35□□□□□ -0.59
HDAC3-208ENST00000476739 COBLO75128 1261 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 REC8O95072 547 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 ADORA2AP29274 412 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 MCM5P33992 734 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 SOX10P56693 466 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 MAP2K5Q13163 448 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 SYDE2Q5VT97 1194 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 RNF20Q5VTR2 975 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 NEK1Q96PY6 1258 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 MYL10Q9BUA6 226 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 TEX13BQ9BXU2 312 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 RANBP17Q9H2T7 1088 aaKnown RBP11.35□□□□□ -0.59
HDAC3-208ENST00000476739 MROH8Q9H579 483 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 CWC22Q9HCG8 908 aaKnown RBP11.35□□□□□ -0.59
HDAC3-208ENST00000476739 FLRT1Q9NZU1 646 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 SNX14Q9Y5W7 946 aa11.35□□□□□ -0.59
HDAC3-208ENST00000476739 ERICH2A1L162 156 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 POTEFA5A3E0 1075 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 SEC24BO95487 1268 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 SLC25A27O95847 323 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 INHAP05111 366 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 PGK2P07205 417 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 PARP1P09874 1014 aaKnown RBP11.34□□□□□ -0.59
HDAC3-208ENST00000476739 OAZ1P54368 228 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 EXOSC10Q01780 885 aaKnown RBP11.34□□□□□ -0.59
HDAC3-208ENST00000476739 TROAPQ12815 778 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 SLC35G1Q2M3R5 365 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 GPATCH4Q5T3I0 446 aaKnown RBP11.34□□□□□ -0.59
HDAC3-208ENST00000476739 RAB11FIP4Q86YS3 637 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 SLAIN1Q8ND83 568 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 PXYLP1Q8TE99 480 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 SOCS4Q8WXH5 440 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 HOMER2Q9NSB8 354 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 MAD2L2Q9UI95 211 aa11.34□□□□□ -0.59
HDAC3-208ENST00000476739 CTDP1Q9Y5B0 961 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-208ENST00000476739 IVNS1ABPQ9Y6Y0 642 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms