RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 ATP2A1O14983 1001 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 MYCNP04198 464 aaPredicted RBP13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 TSPY3P0CV98 308 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 TSPY8P0CW00 308 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 RTP1P59025 263 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 MDM2Q00987 491 aaPredicted RBP13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 PPARAQ07869 468 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 LRIT3Q3SXY7 679 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 ANKRD45Q5TZF3 282 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 SNRNP48Q6IEG0 339 aaKnown RBP13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 GPR153Q6NV75 609 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 SLC39A5Q6ZMH5 540 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 NEDD1Q8NHV4 660 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 LBHD1Q9BQE6 289 aaPredicted RBP13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 PRKAG2Q9UGJ0 569 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 FEM1BQ9UK73 627 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 PLIN4Q96Q06 1357 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 LTBP2Q14767 1821 aa13.16□□□□□ -0.3
SEMA4D-216ENST00000474258 SALL3Q9BXA9 1300 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 RARBP10826 455 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 TFAP4Q01664 338 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 LRRC41Q15345 812 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 FAM47AQ5JRC9 791 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 PPP4R3BQ5MIZ7 849 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 CPXCR1Q8N123 301 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 MSL3Q8N5Y2 521 aaKnown RBP13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 GMCL1P1Q8NEA9 526 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 KIFC2Q96AC6 838 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 DDX11Q96FC9 970 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 RIPK3Q9Y572 518 aa13.15□□□□□ -0.3
SEMA4D-216ENST00000474258 FDX1P10109 184 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 BMP3P12645 472 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 ADCYAP1R1P41586 468 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 SLC4A3P48751 1232 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 SLFN13Q68D06 897 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 LRRC47Q8N1G4 583 aaKnown RBP13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 EVI5LQ96CN4 794 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 SLC38A10Q9HBR0 1119 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 RAVER2Q9HCJ3 691 aaKnown RBP13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 CNPY2Q9Y2B0 182 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 ATP11BQ9Y2G3 1177 aa13.14□□□□□ -0.31
SEMA4D-216ENST00000474258 DNAJC25-GNG10A0A024R161 153 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 ZNF865P0CJ78 1059 aaPredicted RBP13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 AKR1A1P14550 325 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 TAL1P17542 331 aaPredicted RBP13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 OAZ1P54368 228 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 HDAC1Q13547 482 aaPredicted RBP13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 SNX17Q15036 470 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 C1orf53Q5VUE5 145 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 B4GALNT3Q6L9W6 998 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 MAMDC4Q6UXC1 1216 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 CCDC129Q6ZRS4 1044 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 RNF180Q86T96 592 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 CHST13Q8NET6 341 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 CHURC1Q8WUH1 139 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 FERMT2Q96AC1 680 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 CCDC136Q96JN2 1154 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 XPNPEP3Q9NQH7 507 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 FBXO40Q9UH90 709 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 SYNGAP1Q96PV0 1343 aa13.13□□□□□ -0.31
SEMA4D-216ENST00000474258 LAMA3Q16787 3333 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 TSPY2A6NKD2 308 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 TMEM232C9JQI7 657 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 PDE1AP54750 535 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 CTDSPL2Q05D32 466 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 ZNF467Q7Z7K2 595 aaPredicted RBP13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 FAM160B2Q86V87 743 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 TICAM2Q86XR7 235 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 ANKRD35Q8N283 1001 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 STAG1Q8WVM7 1258 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 HELLSQ9NRZ9 838 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 FAM184BQ9ULE4 1060 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 ISY1Q9ULR0 285 aaKnown RBP13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 PHF24Q9UPV7 400 aa13.12□□□□□ -0.31
SEMA4D-216ENST00000474258 FOXP2O15409 715 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 SNAI1O95863 264 aaPredicted RBP13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 PGK1P00558 417 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 SLC1A4P43007 532 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 STAT2P52630 851 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 IKQ13123 557 aaPredicted RBP13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 ALX1Q15699 326 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 TRIM60Q495X7 471 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 GMCL1Q96IK5 515 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 ANAPC4Q9UJX5 808 aa13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.11□□□□□ -0.31
SEMA4D-216ENST00000474258 RANBP6O60518 1105 aaKnown RBP13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 PLA2G6O60733 806 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 MCCP23508 829 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 MCMDC2Q4G0Z9 681 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 RCSD1Q6JBY9 416 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 DEFB123Q8N688 67 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 TSEN34Q9BSV6 310 aaKnown RBP13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 ABHD16BQ9H3Z7 469 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 INCENPQ9NQS7 918 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 PRDM5Q9NQX1 630 aaPredicted RBP13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 IL17RBQ9NRM6 502 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 STX8Q9UNK0 236 aa13.1□□□□□ -0.31
SEMA4D-216ENST00000474258 ORC4O43929 436 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 ADAMTS4O75173 837 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms