RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MCM3APO60318 1980 aa22.36■■□□□ 1.17
CCDC88B-206ENST00000473405 ATP2A1O14983 1001 aa22.35■■□□□ 1.17
CCDC88B-206ENST00000473405 SLC3A2P08195 630 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-206ENST00000473405 TFAP4Q01664 338 aa22.35■■□□□ 1.17
CCDC88B-206ENST00000473405 GJC2Q5T442 439 aaPredicted RBP22.35■■□□□ 1.17
CCDC88B-206ENST00000473405 DIS3Q9Y2L1 958 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-206ENST00000473405 TACC3Q9Y6A5 838 aa22.35■■□□□ 1.17
CCDC88B-206ENST00000473405 TINF2Q9BSI4 451 aa22.34■■□□□ 1.17
CCDC88B-206ENST00000473405 SLC38A10Q9HBR0 1119 aa22.34■■□□□ 1.17
CCDC88B-206ENST00000473405 INCENPQ9NQS7 918 aa22.34■■□□□ 1.17
CCDC88B-206ENST00000473405 A0A0C4DFX4 3053 aa22.34■■□□□ 1.17
CCDC88B-206ENST00000473405 A0A0D9SFI3 127 aa22.33■■□□□ 1.17
CCDC88B-206ENST00000473405 CTDSPL2Q05D32 466 aa22.33■■□□□ 1.17
CCDC88B-206ENST00000473405 KIFC2Q96AC6 838 aa22.33■■□□□ 1.17
CCDC88B-206ENST00000473405 FAM227BQ96M60 508 aa22.33■■□□□ 1.17
CCDC88B-206ENST00000473405 NRBP1Q9UHY1 535 aa22.33■■□□□ 1.17
CCDC88B-206ENST00000473405 FEM1BQ9UK73 627 aa22.33■■□□□ 1.17
CCDC88B-206ENST00000473405 LAMA4Q16363 1823 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 TAL1P17542 331 aaPredicted RBP22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 ATN1P54259 1190 aaPredicted RBP22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 AAMPQ13685 434 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 SLFN13Q68D06 897 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 SMC5Q8IY18 1101 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 ARRDC4Q8NCT1 418 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 LNPKQ9C0E8 428 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 IL17RBQ9NRM6 502 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 HELLSQ9NRZ9 838 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 ANAPC4Q9UJX5 808 aa22.32■■□□□ 1.16
CCDC88B-206ENST00000473405 DNAJC25-GNG10A0A024R161 153 aa22.31■■□□□ 1.16
CCDC88B-206ENST00000473405 ZBED4O75132 1171 aa22.31■■□□□ 1.16
CCDC88B-206ENST00000473405 BMP3P12645 472 aa22.31■■□□□ 1.16
CCDC88B-206ENST00000473405 LRRC41Q15345 812 aa22.31■■□□□ 1.16
CCDC88B-206ENST00000473405 CPXCR1Q8N123 301 aa22.31■■□□□ 1.16
CCDC88B-206ENST00000473405 LRCH3Q96II8 777 aa22.31■■□□□ 1.16
CCDC88B-206ENST00000473405 RAVER2Q9HCJ3 691 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-206ENST00000473405 KBTBD13C9JR72 458 aa22.3■■□□□ 1.16
CCDC88B-206ENST00000473405 NMT2O60551 498 aa22.3■■□□□ 1.16
CCDC88B-206ENST00000473405 ZNF865P0CJ78 1059 aaPredicted RBP22.3■■□□□ 1.16
CCDC88B-206ENST00000473405 ALX1Q15699 326 aa22.3■■□□□ 1.16
CCDC88B-206ENST00000473405 GMCL1Q96IK5 515 aa22.3■■□□□ 1.16
CCDC88B-206ENST00000473405 LRRC37A2A6NM11 1700 aa22.3■■□□□ 1.16
CCDC88B-206ENST00000473405 TSPY2A6NKD2 308 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 TMEM232C9JQI7 657 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 STAT2P52630 851 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 OAZ1P54368 228 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 RTP1P59025 263 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 RASGRP2Q7LDG7 609 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 ZNF589Q86UQ0 364 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 TICAM2Q86XR7 235 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 STX8Q9UNK0 236 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 LCTP09848 1927 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 SYNGAP1Q96PV0 1343 aa22.29■■□□□ 1.16
CCDC88B-206ENST00000473405 ORC4O43929 436 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 MYCNP04198 464 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 FGRP09769 529 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 NOVP48745 357 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 SLC4A3P48751 1232 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 SNX17Q15036 470 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 MCMDC2Q4G0Z9 681 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 MAMDC4Q6UXC1 1216 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 TDHQ8IZJ6 230 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 MSL3Q8N5Y2 521 aaKnown RBP22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 LENG1Q96BZ8 264 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 FGD4Q96M96 766 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 XPNPEP3Q9NQH7 507 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 ZMYM6O95789 1325 aa22.28■■□□□ 1.16
CCDC88B-206ENST00000473405 SNAI1O95863 264 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 IGHDP01880 384 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 RARBP10826 455 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 SLC1A4P43007 532 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 MDM2Q00987 491 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 NMIQ13287 307 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 PPP4R3BQ5MIZ7 849 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 B4GALNT3Q6L9W6 998 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 SLC39A5Q6ZMH5 540 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 CHMP4CQ96CF2 233 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 DDX11Q96FC9 970 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 UBE2OQ9C0C9 1292 aaKnown RBP22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 RWDD1Q9H446 243 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 CTDP1Q9Y5B0 961 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 ZNF536O15090 1300 aa22.27■■□□□ 1.16
CCDC88B-206ENST00000473405 CDH23Q9H251 3354 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 RANBP6O60518 1105 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 FGAP02671 866 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 AKR1A1P14550 325 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 MCCP23508 829 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 ADCYAP1R1P41586 468 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 LRIT3Q3SXY7 679 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 CHD1LQ86WJ1 897 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 CHST13Q8NET6 341 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 EXOC6Q8TAG9 804 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 FBXO40Q9UH90 709 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 PHF24Q9UPV7 400 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 CNPY2Q9Y2B0 182 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 ATP11BQ9Y2G3 1177 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 CCDC171Q6TFL3 1326 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 EYSQ5T1H1 3165 aa22.26■■□□□ 1.15
CCDC88B-206ENST00000473405 UNC80Q8N2C7 3258 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 TRIM6-TRIM34B2RNG4 842 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms