RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 PLEKHM2Q8IWE5 1019 aa19.82■□□□□ 0.76
USP40-212ENST00000473191 GMCL1P1Q8NEA9 526 aa19.82■□□□□ 0.76
USP40-212ENST00000473191 RILPL2Q969X0 211 aa19.82■□□□□ 0.76
USP40-212ENST00000473191 SENP6Q9GZR1 1112 aaPredicted RBP19.82■□□□□ 0.76
USP40-212ENST00000473191 ZNF287Q9HBT7 754 aa19.82■□□□□ 0.76
USP40-212ENST00000473191 HELLSQ9NRZ9 838 aa19.82■□□□□ 0.76
USP40-212ENST00000473191 DNAH12Q6ZR08 3092 aa19.82■□□□□ 0.76
USP40-212ENST00000473191 TRIM6-TRIM34B2RNG4 842 aa19.81■□□□□ 0.76
USP40-212ENST00000473191 FGAP02671 866 aa19.81■□□□□ 0.76
USP40-212ENST00000473191 ATN1P54259 1190 aaPredicted RBP19.81■□□□□ 0.76
USP40-212ENST00000473191 CHD1LQ86WJ1 897 aa19.81■□□□□ 0.76
USP40-212ENST00000473191 PRPF38AQ8NAV1 312 aaKnown RBP19.81■□□□□ 0.76
USP40-212ENST00000473191 LENG1Q96BZ8 264 aaPredicted RBP19.81■□□□□ 0.76
USP40-212ENST00000473191 RWDD1Q9H446 243 aaPredicted RBP19.81■□□□□ 0.76
USP40-212ENST00000473191 SUPT16HQ9Y5B9 1047 aaKnown RBP19.81■□□□□ 0.76
USP40-212ENST00000473191 SOX1O00570 391 aaPredicted RBP19.8■□□□□ 0.76
USP40-212ENST00000473191 SNAP25P60880 206 aa19.8■□□□□ 0.76
USP40-212ENST00000473191 NUCB1Q02818 461 aa19.8■□□□□ 0.76
USP40-212ENST00000473191 MCMDC2Q4G0Z9 681 aa19.8■□□□□ 0.76
USP40-212ENST00000473191 GDF15Q99988 308 aa19.8■□□□□ 0.76
USP40-212ENST00000473191 TEX13BQ9BXU2 312 aa19.8■□□□□ 0.76
USP40-212ENST00000473191 SLC38A10Q9HBR0 1119 aa19.8■□□□□ 0.76
USP40-212ENST00000473191 ANAPC4Q9UJX5 808 aa19.8■□□□□ 0.76
USP40-212ENST00000473191 TSPY2A6NKD2 308 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 TMEM232C9JQI7 657 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 SEPT4O43236 478 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 SLC3A2P08195 630 aaKnown RBP19.79■□□□□ 0.76
USP40-212ENST00000473191 HSPD1P10809 573 aaKnown RBP19.79■□□□□ 0.76
USP40-212ENST00000473191 BMP3P12645 472 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 MCCP23508 829 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 HAND2P61296 217 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 KCTD2Q14681 263 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 KCTD1Q719H9 257 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 TINF2Q9BSI4 451 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 STX8Q9UNK0 236 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 MTMR7Q9Y216 660 aa19.79■□□□□ 0.76
USP40-212ENST00000473191 SMCHD1A6NHR9 2005 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 TRIOBPQ9H2D6 2365 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 DNM1LO00429 736 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 RANBP6O60518 1105 aaKnown RBP19.78■□□□□ 0.76
USP40-212ENST00000473191 MSCO60682 206 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 MYCNP04198 464 aaPredicted RBP19.78■□□□□ 0.76
USP40-212ENST00000473191 FGRP09769 529 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 MAGEA10P43363 369 aaPredicted RBP19.78■□□□□ 0.76
USP40-212ENST00000473191 IRX6P78412 446 aaPredicted RBP19.78■□□□□ 0.76
USP40-212ENST00000473191 ALX1Q15699 326 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 FGD4Q96M96 766 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 SLC5A4Q9NY91 659 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 FEM1BQ9UK73 627 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 LAMA3Q16787 3333 aa19.78■□□□□ 0.76
USP40-212ENST00000473191 ZNF536O15090 1300 aa19.77■□□□□ 0.76
USP40-212ENST00000473191 DNAJC25-GNG10A0A024R161 153 aa19.77■□□□□ 0.76
USP40-212ENST00000473191 ATP2A1O14983 1001 aa19.77■□□□□ 0.76
USP40-212ENST00000473191 ZBED4O75132 1171 aa19.77■□□□□ 0.76
USP40-212ENST00000473191 ZNF865P0CJ78 1059 aaPredicted RBP19.77■□□□□ 0.76
USP40-212ENST00000473191 SDSP20132 328 aa19.77■□□□□ 0.76
USP40-212ENST00000473191 AAMPQ13685 434 aa19.77■□□□□ 0.76
USP40-212ENST00000473191 RRP12Q5JTH9 1297 aaKnown RBP19.77■□□□□ 0.76
USP40-212ENST00000473191 ISY1Q9ULR0 285 aaKnown RBP19.77■□□□□ 0.76
USP40-212ENST00000473191 CCDC171Q6TFL3 1326 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 SNAI1O95863 264 aaPredicted RBP19.76■□□□□ 0.75
USP40-212ENST00000473191 NOVP48745 357 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 TBC1D10CQ8IV04 446 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 LRCH3Q96II8 777 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 AGBL1Q96MI9 1066 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 OSBPL3Q9H4L5 887 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 HOMER2Q9NSB8 354 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 SYNPO2Q9UMS6 1093 aa19.76■□□□□ 0.75
USP40-212ENST00000473191 DIS3Q9Y2L1 958 aaKnown RBP19.76■□□□□ 0.75
USP40-212ENST00000473191 ORC4O43929 436 aa19.75■□□□□ 0.75
USP40-212ENST00000473191 SLC1A4P43007 532 aa19.75■□□□□ 0.75
USP40-212ENST00000473191 IRX5P78411 483 aaPredicted RBP19.75■□□□□ 0.75
USP40-212ENST00000473191 MDM2Q00987 491 aaPredicted RBP19.75■□□□□ 0.75
USP40-212ENST00000473191 LRRC41Q15345 812 aa19.75■□□□□ 0.75
USP40-212ENST00000473191 FERMT2Q96AC1 680 aa19.75■□□□□ 0.75
USP40-212ENST00000473191 GMCL1Q96IK5 515 aa19.75■□□□□ 0.75
USP40-212ENST00000473191 IL25Q9H293 177 aa19.75■□□□□ 0.75
USP40-212ENST00000473191 TOMM22Q9NS69 142 aa19.75■□□□□ 0.75
USP40-212ENST00000473191 DDX49Q9Y6V7 483 aaKnown RBP19.75■□□□□ 0.75
USP40-212ENST00000473191 ADCY6O43306 1168 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 PGK1P00558 417 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 PDE4AP27815 886 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 COPB2P35606 906 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 STAT2P52630 851 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 TTBK2Q6IQ55 1244 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 STAG1Q8WVM7 1258 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 DDX11Q96FC9 970 aa19.74■□□□□ 0.75
USP40-212ENST00000473191 BMP8BP34820 402 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 SLC16A2P36021 539 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 ADCYAP1R1P41586 468 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 RTP1P59025 263 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 CNTN2Q02246 1040 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 CCDC174Q6PII3 467 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 CWC27Q6UX04 472 aaKnown RBP19.73■□□□□ 0.75
USP40-212ENST00000473191 SLC39A5Q6ZMH5 540 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 PRR12Q9ULL5 1215 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 CTDP1Q9Y5B0 961 aaPredicted RBP19.73■□□□□ 0.75
USP40-212ENST00000473191 NEDD4P46934 1319 aa19.73■□□□□ 0.75
USP40-212ENST00000473191 MCM3APO60318 1980 aa19.72■□□□□ 0.75
USP40-212ENST00000473191 IKQ13123 557 aaPredicted RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms