RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DNM1LO00429 736 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 MSCO60682 206 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 STAT3P40763 770 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 NMIQ13287 307 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 MCMDC2Q4G0Z9 681 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 ANO1Q5XXA6 986 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 OLFML2BQ68BL8 750 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 RIOX2Q8IUF8 465 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 REPS2Q8NFH8 660 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 INCENPQ9NQS7 918 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 SLC5A4Q9NY91 659 aa18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 ZNF214Q9UL59 606 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 ISY1Q9ULR0 285 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-205ENST00000472524 DNAH12Q6ZR08 3092 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 TSPY2A6NKD2 308 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 NUCB1Q02818 461 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 GJC2Q5T442 439 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 PLEKHM2Q8IWE5 1019 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 ABRAQ8N0Z2 381 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 MKL1Q969V6 931 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 KIFC2Q96AC6 838 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 CHMP4CQ96CF2 233 aa18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.65■□□□□ 0.58
CCDC88B-205ENST00000472524 SLC4A3P48751 1232 aa18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 PRAMEF19Q5SWL8 479 aa18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 SLFN13Q68D06 897 aa18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 SNRNP48Q6IEG0 339 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 ZNF589Q86UQ0 364 aaPredicted RBP18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 GMCL1P1Q8NEA9 526 aa18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 CTDP1Q9Y5B0 961 aaPredicted RBP18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 LAMA4Q16363 1823 aa18.64■□□□□ 0.57
CCDC88B-205ENST00000472524 RANBP6O60518 1105 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 PGK2P07205 417 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 COPB2P35606 906 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 KCTD2Q14681 263 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 ALX1Q15699 326 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 CPXCR1Q8N123 301 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 PRPF38AQ8NAV1 312 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 MAML3Q96JK9 1138 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 TEX13BQ9BXU2 312 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 TOMM22Q9NS69 142 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 FEM1BQ9UK73 627 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 SYNPO2Q9UMS6 1093 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 STX8Q9UNK0 236 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 TACC3Q9Y6A5 838 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 CCDC171Q6TFL3 1326 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 A0A0C4DFX4 3053 aa18.63■□□□□ 0.57
CCDC88B-205ENST00000472524 NMT2O60551 498 aa18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 ZBED4O75132 1171 aa18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 FGAP02671 866 aa18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 BMP3P12645 472 aa18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 RTP1P59025 263 aa18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 RRP12Q5JTH9 1297 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 LBHD1Q9BQE6 289 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 MTMR10Q9NXD2 777 aa18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 ANAPC4Q9UJX5 808 aa18.62■□□□□ 0.57
CCDC88B-205ENST00000472524 DLL1O00548 723 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 SEPT4O43236 478 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 MYCNP04198 464 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 HSPD1P10809 573 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 SDSP20132 328 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 IRX6P78412 446 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 TICAM2Q86XR7 235 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 ARRDC4Q8NCT1 418 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 OSBPL3Q9H4L5 887 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 RAVER2Q9HCJ3 691 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 MTMR7Q9Y216 660 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 ATP11BQ9Y2G3 1177 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 RIPK3Q9Y572 518 aa18.61■□□□□ 0.57
CCDC88B-205ENST00000472524 TMEM232C9JQI7 657 aa18.6■□□□□ 0.57
CCDC88B-205ENST00000472524 HAND2P61296 217 aa18.6■□□□□ 0.57
CCDC88B-205ENST00000472524 IKQ13123 557 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-205ENST00000472524 PPP4R3BQ5MIZ7 849 aa18.6■□□□□ 0.57
CCDC88B-205ENST00000472524 SLC38A10Q9HBR0 1119 aa18.6■□□□□ 0.57
CCDC88B-205ENST00000472524 IL17RBQ9NRM6 502 aa18.6■□□□□ 0.57
CCDC88B-205ENST00000472524 STXBP5LQ9Y2K9 1186 aa18.6■□□□□ 0.57
CCDC88B-205ENST00000472524 ZMYM6O95789 1325 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 KBTBD13C9JR72 458 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 ORC4O43929 436 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 MCCP23508 829 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 SLC1A4P43007 532 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 STAT2P52630 851 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 ZNF792Q3KQV3 632 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 SLC39A5Q6ZMH5 540 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 RASGRP2Q7LDG7 609 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 GMCL1Q96IK5 515 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 DIAPH3Q9NSV4 1193 aa18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 LAMA2P24043 3122 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-205ENST00000472524 ATP2A1O14983 1001 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 ADCYAP1R1P41586 468 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 MFAP1P55081 439 aaKnown RBP18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 LRRC41Q15345 812 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 TRIM60Q495X7 471 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 KCTD1Q719H9 257 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 DDX11Q96FC9 970 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 TINF2Q9BSI4 451 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 PRKAG2Q9UGJ0 569 aa18.58■□□□□ 0.56
CCDC88B-205ENST00000472524 FGRP09769 529 aa18.57■□□□□ 0.56
CCDC88B-205ENST00000472524 CWC27Q6UX04 472 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-205ENST00000472524 FAM160B2Q86V87 743 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms