RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SKIDA1Q1XH10 827 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 FKBP15Q5T1M5 1219 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 ARMCX5Q6P1M9 558 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 CCDC148Q8NFR7 591 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 NELFBQ8WX92 580 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 CCDC47Q96A33 483 aaKnown RBP15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 MEIS1O00470 390 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 GNAQP50148 359 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 NONOQ15233 471 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 PTPROQ16827 1216 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 ZNF215Q9UL58 517 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 SEMA3EO15041 775 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 CFBP00751 764 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 PRAMEF18Q5VWM3 479 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 PROM2Q8N271 834 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 CERS5Q8N5B7 392 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 PHF20Q9BVI0 1012 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 SRRTQ9BXP5 876 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 TMOD2Q9NZR1 351 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 CAVIN2O95810 425 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 PLCG2P16885 1265 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 PFKFB3Q16875 520 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 CABP7Q86V35 215 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 PUF60Q9UHX1 559 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 MYH14Q7Z406 1995 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 NEMFO60524 1076 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 ARHGAP29Q52LW3 1261 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 POTEDQ86YR6 584 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 PLEKHA4Q9H4M7 779 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 EXOC1Q9NV70 894 aa15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 CTDP1Q9Y5B0 961 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-211ENST00000471947 BCL9LQ86UU0 1499 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 CD44P16070 742 aaKnown RBP15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 SNX29Q8TEQ0 813 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 CCDC12Q8WUD4 166 aaPredicted RBP15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 KIFC2Q96AC6 838 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 PSMB7Q99436 277 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 BAG1Q99933 345 aaPredicted RBP15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 RTFDC1Q9BY42 306 aaPredicted RBP15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 LRWD1Q9UFC0 647 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 PCDHA4Q9UN74 947 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 TFR2Q9UP52 801 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 STRCQ7RTU9 1775 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 GSDMDP57764 484 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 RBM6P78332 1123 aaKnown RBP15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 PPARDQ03181 441 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 ELF2Q15723 593 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 CERKLQ49MI3 558 aaPredicted RBP15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 CALML4Q96GE6 196 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 SH2D3AQ9BRG2 576 aa15.49■□□□□ 0.07
CCDC88A-211ENST00000471947 CRKP46108 304 aa15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 MRFAP1L1Q96HT8 127 aa15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 CRACR2AQ9BSW2 395 aa15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 STIM1Q13586 685 aa15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 OGFOD1Q8N543 542 aa15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 CSRNP1Q96S65 589 aa15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 SOWAHDA6NJG2 315 aa15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 POLRMTO00411 1230 aaKnown RBP15.48■□□□□ 0.07
CCDC88A-211ENST00000471947 GH2P01242 217 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 PLCG1P19174 1290 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 TRIM21P19474 475 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 GNA11P29992 359 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 MCM6Q14566 821 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 TCERG1LQ5VWI1 586 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 CDC42EP5Q6NZY7 148 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 SLF1Q9BQI6 1058 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 PCDHA1Q9Y5I3 950 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 PARP4Q9UKK3 1724 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 RXRBP28702 533 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 CASP14P31944 242 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 CALCRLQ16602 461 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 PRR16Q569H4 304 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 KANK3Q6NY19 840 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 GUCA1BQ9UMX6 200 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 FZD1Q9UP38 647 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 SLFN14P0C7P3 912 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 ADCY7P51828 1080 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 KIF4BQ2VIQ3 1234 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 TBC1D22AQ8WUA7 517 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 MAD2L2Q9UI95 211 aa15.47■□□□□ 0.07
CCDC88A-211ENST00000471947 SLIT2O94813 1529 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 ECE2O60344 883 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 FCER1AP12319 257 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 ALDH1B1P30837 517 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 STAT3P40763 770 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 ICA1Q05084 483 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 ERCC6LQ2NKX8 1250 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 SLFN13Q68D06 897 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 NCAPH2Q6IBW4 605 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 MLKLQ8NB16 471 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 MYRIPQ8NFW9 859 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 WDR19Q8NEZ3 1342 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 DDTLA6NHG4 134 aaPredicted RBP15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 ORC4O43929 436 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 RPN1P04843 607 aaKnown RBP15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 PDE6BP35913 854 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 NCAPHQ15003 741 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 DGKHQ86XP1 1220 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms