RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 DYNLL2Q96FJ2 89 aa8.33□□□□□ -1.08
HDAC1-204ENST00000471488 CRNKL1Q9BZJ0 848 aaKnown RBP8.33□□□□□ -1.08
HDAC1-204ENST00000471488 SH2D4AQ9H788 454 aa8.33□□□□□ -1.08
HDAC1-204ENST00000471488 TLR7Q9NYK1 1049 aaKnown RBP8.33□□□□□ -1.08
HDAC1-204ENST00000471488 NRBP1Q9UHY1 535 aa8.33□□□□□ -1.08
HDAC1-204ENST00000471488 MYO5AQ9Y4I1 1855 aaKnown RBP8.33□□□□□ -1.08
HDAC1-204ENST00000471488 BCAR3O75815 825 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 CA3P07451 260 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 AKR1B1P15121 316 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 ATP2A2P16615 1042 aaKnown RBP8.32□□□□□ -1.08
HDAC1-204ENST00000471488 SSTR3P32745 418 aaPredicted RBP8.32□□□□□ -1.08
HDAC1-204ENST00000471488 CSPP1Q1MSJ5 1256 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 CCDC144BQ3MJ40 725 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 FAM83BQ5T0W9 1011 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 SNRNP48Q6IEG0 339 aaKnown RBP8.32□□□□□ -1.08
HDAC1-204ENST00000471488 CERS3Q8IU89 383 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 ANKRD35Q8N283 1001 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 HERVK_113Q902F9 699 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 CHMP4CQ96CF2 233 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 SCLYQ96I15 445 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 ANTXR1Q9H6X2 564 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 C1orf115Q9H7X2 142 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 VCPKMTQ9H867 229 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 HOMER2Q9NSB8 354 aa8.32□□□□□ -1.08
HDAC1-204ENST00000471488 ELP1O95163 1332 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 ZNF521Q96K83 1311 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 VWA5AO00534 786 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 ERC2O15083 957 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 WDR46O15213 610 aaKnown RBP8.31□□□□□ -1.08
HDAC1-204ENST00000471488 DUSP11O75319 330 aaKnown RBP8.31□□□□□ -1.08
HDAC1-204ENST00000471488 CHMP4BP1P59074 171 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 SLFN5Q08AF3 891 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 ACVR2BQ13705 512 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 TMEM67Q5HYA8 995 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 CXCL17Q6UXB2 119 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 RIOX2Q8IUF8 465 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 FAM126BQ8IXS8 530 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 AMOTL1Q8IY63 956 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 KLHDC9Q8NEP7 349 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 HLA-CQ95604 372 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 NUP88Q99567 741 aaPredicted RBP8.31□□□□□ -1.08
HDAC1-204ENST00000471488 TRPV6Q9H1D0 765 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 GOPCQ9HD26 462 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 GBF1Q92538 1859 aa8.31□□□□□ -1.08
HDAC1-204ENST00000471488 ZNFX1Q9P2E3 1918 aaKnown RBP8.31□□□□□ -1.08
HDAC1-204ENST00000471488 XIRP2A4UGR9 3374 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 NAV1Q8NEY1 1877 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 CYP2D7A0A087X1C5 515 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 SMIM22K7EJ46 135 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 ADCY6O43306 1168 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 SNAI1O95863 264 aaPredicted RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 EEF2P13639 858 aaKnown RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 CDK7P50613 346 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 PSMC6P62333 389 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 MTX1Q13505 466 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 SLC9C2Q5TAH2 1124 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 RASIP1Q5U651 963 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 EP400NLQ6ZTU2 488 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 RPUSD2Q8IZ73 545 aaKnown RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 KHSRPQ92945 711 aaKnown RBP eCLIP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 KIFC2Q96AC6 838 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 DNAJC2Q99543 621 aaKnown RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 FTOQ9C0B1 505 aaKnown RBP eCLIP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 AP5M1Q9H0R1 490 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 ARMT1Q9H993 441 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 DBNLQ9UJU6 430 aaKnown RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 MTUS1Q9ULD2 1270 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 TNNQ9UQP3 1299 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 DIS3Q9Y2L1 958 aaKnown RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 TMX2Q9Y320 296 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 PCDHA11Q9Y5I1 949 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 MTCH2Q9Y6C9 303 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 COL11A1P12107 1806 aaPredicted RBP8.3□□□□□ -1.08
HDAC1-204ENST00000471488 BDP1A6H8Y1 2624 aa8.3□□□□□ -1.08
HDAC1-204ENST00000471488 SYNGAP1Q96PV0 1343 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 A0A0G2JMZ2 1700 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 B4GALT4O60513 344 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 ZBED4O75132 1171 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 PTGS1P23219 599 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 COPB2P35606 906 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 MRE11P49959 708 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 TNFAIP2Q03169 654 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 ITGA7Q13683 1181 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 FAM47CQ5HY64 1035 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 CCSAPQ6IQ19 270 aaPredicted RBP8.29□□□□□ -1.08
HDAC1-204ENST00000471488 EEPD1Q7L9B9 569 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 AACSQ86V21 672 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 LCORLQ8N3X6 602 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 DDRGK1Q96HY6 314 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 SLF1Q9BQI6 1058 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 TEX13BQ9BXU2 312 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 RAVER2Q9HCJ3 691 aaKnown RBP8.29□□□□□ -1.08
HDAC1-204ENST00000471488 SWAP70Q9UH65 585 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 PPP1R9AQ9ULJ8 1098 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 COG5Q9UP83 839 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 RIPK3Q9Y572 518 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 CHD9Q3L8U1 2897 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 LRRC37A2A6NM11 1700 aa8.29□□□□□ -1.08
HDAC1-204ENST00000471488 ZNF532Q9HCE3 1301 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms