RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 PRPF38AQ8NAV1 312 aaKnown RBP25.11■■□□□ 1.61
COL9A3-207ENST00000467819 KIFC2Q96AC6 838 aa25.11■■□□□ 1.61
COL9A3-207ENST00000467819 NACAP1Q9BZK3 213 aa25.11■■□□□ 1.61
COL9A3-207ENST00000467819 PRDM5Q9NQX1 630 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-207ENST00000467819 CTDP1Q9Y5B0 961 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-207ENST00000467819 MTMR4Q9NYA4 1195 aa25.1■■□□□ 1.61
COL9A3-207ENST00000467819 RIPK3Q9Y572 518 aa25.1■■□□□ 1.61
COL9A3-207ENST00000467819 LAMA2P24043 3122 aaKnown RBP25.09■■□□□ 1.61
COL9A3-207ENST00000467819 ZBED4O75132 1171 aa25.09■■□□□ 1.61
COL9A3-207ENST00000467819 PGK1P00558 417 aa25.09■■□□□ 1.61
COL9A3-207ENST00000467819 LENG1Q96BZ8 264 aaPredicted RBP25.09■■□□□ 1.61
COL9A3-207ENST00000467819 DDX11Q96FC9 970 aa25.09■■□□□ 1.61
COL9A3-207ENST00000467819 NAPBQ9H115 298 aa25.09■■□□□ 1.61
COL9A3-207ENST00000467819 TTLL1O95922 423 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 ZNF865P0CJ78 1059 aaPredicted RBP25.08■■□□□ 1.61
COL9A3-207ENST00000467819 TSPY3P0CV98 308 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 TSPY8P0CW00 308 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 MX1P20591 662 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 SNX17Q15036 470 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 ZMYM1Q5SVZ6 1142 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 SLC17A8Q8NDX2 589 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 MKL1Q969V6 931 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 RAVER2Q9HCJ3 691 aaKnown RBP25.08■■□□□ 1.61
COL9A3-207ENST00000467819 ISY1Q9ULR0 285 aaKnown RBP25.08■■□□□ 1.61
COL9A3-207ENST00000467819 CNPY2Q9Y2B0 182 aa25.08■■□□□ 1.61
COL9A3-207ENST00000467819 PLIN4Q96Q06 1357 aa25.07■■□□□ 1.6
COL9A3-207ENST00000467819 AKR1A1P14550 325 aa25.07■■□□□ 1.6
COL9A3-207ENST00000467819 PDE4BQ07343 736 aa25.07■■□□□ 1.6
COL9A3-207ENST00000467819 RNF180Q86T96 592 aa25.07■■□□□ 1.6
COL9A3-207ENST00000467819 FEM1BQ9UK73 627 aa25.07■■□□□ 1.6
COL9A3-207ENST00000467819 PHF24Q9UPV7 400 aa25.07■■□□□ 1.6
COL9A3-207ENST00000467819 SLC3A2P08195 630 aaKnown RBP25.06■■□□□ 1.6
COL9A3-207ENST00000467819 PPARAQ07869 468 aa25.06■■□□□ 1.6
COL9A3-207ENST00000467819 SLFN13Q68D06 897 aa25.06■■□□□ 1.6
COL9A3-207ENST00000467819 CCDC129Q6ZRS4 1044 aa25.06■■□□□ 1.6
COL9A3-207ENST00000467819 GMCL1P1Q8NEA9 526 aa25.06■■□□□ 1.6
COL9A3-207ENST00000467819 NEDD1Q8NHV4 660 aa25.06■■□□□ 1.6
COL9A3-207ENST00000467819 SLC38A10Q9HBR0 1119 aa25.06■■□□□ 1.6
COL9A3-207ENST00000467819 PDLIM7Q9NR12 457 aa25.06■■□□□ 1.6
COL9A3-207ENST00000467819 ATP2A1O14983 1001 aa25.05■■□□□ 1.6
COL9A3-207ENST00000467819 RRP1P56182 461 aaKnown RBP25.05■■□□□ 1.6
COL9A3-207ENST00000467819 TFAP4Q01664 338 aa25.05■■□□□ 1.6
COL9A3-207ENST00000467819 CHMP4CQ96CF2 233 aa25.05■■□□□ 1.6
COL9A3-207ENST00000467819 MTMR10Q9NXD2 777 aa25.05■■□□□ 1.6
COL9A3-207ENST00000467819 SYNPO2Q9UMS6 1093 aa25.05■■□□□ 1.6
COL9A3-207ENST00000467819 DNAJC25-GNG10A0A024R161 153 aa25.04■■□□□ 1.6
COL9A3-207ENST00000467819 BMP3P12645 472 aa25.04■■□□□ 1.6
COL9A3-207ENST00000467819 SH3RF1Q7Z6J0 888 aa25.04■■□□□ 1.6
COL9A3-207ENST00000467819 MSL3Q8N5Y2 521 aaKnown RBP25.04■■□□□ 1.6
COL9A3-207ENST00000467819 BADQ92934 168 aa25.04■■□□□ 1.6
COL9A3-207ENST00000467819 ZBTB47Q9UFB7 747 aaPredicted RBP25.04■■□□□ 1.6
COL9A3-207ENST00000467819 ZHX1Q9UKY1 873 aaPredicted RBP25.04■■□□□ 1.6
COL9A3-207ENST00000467819 SYNGAP1Q96PV0 1343 aa25.04■■□□□ 1.6
COL9A3-207ENST00000467819 TLE2Q04725 743 aa25.03■■□□□ 1.6
COL9A3-207ENST00000467819 C1orf53Q5VUE5 145 aa25.03■■□□□ 1.6
COL9A3-207ENST00000467819 ANKRD35Q8N283 1001 aa25.03■■□□□ 1.6
COL9A3-207ENST00000467819 SALL3Q9BXA9 1300 aa25.03■■□□□ 1.6
COL9A3-207ENST00000467819 A0A1W2PQ45 241 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-207ENST00000467819 A0A1W2PQY0 241 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 TRIM43BA6NCK2 446 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 TMEM232C9JQI7 657 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 ADAMTS4O75173 837 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 SNAI1O95863 264 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-207ENST00000467819 ANKRD45Q5TZF3 282 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 MAMDC4Q6UXC1 1216 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 TRIM43Q96BQ3 446 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-207ENST00000467819 CRBNQ96SW2 442 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 HOMER2Q9NSB8 354 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 FAM184BQ9ULE4 1060 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 SYNRGQ9UMZ2 1314 aa25.02■■□□□ 1.6
COL9A3-207ENST00000467819 CTDSPL2Q05D32 466 aa25.01■■□□□ 1.59
COL9A3-207ENST00000467819 IKQ13123 557 aaPredicted RBP25.01■■□□□ 1.59
COL9A3-207ENST00000467819 SHHQ15465 462 aa25.01■■□□□ 1.59
COL9A3-207ENST00000467819 CHST13Q8NET6 341 aa25.01■■□□□ 1.59
COL9A3-207ENST00000467819 FBXO40Q9UH90 709 aa25.01■■□□□ 1.59
COL9A3-207ENST00000467819 STXBP5LQ9Y2K9 1186 aa25.01■■□□□ 1.59
COL9A3-207ENST00000467819 FOXP2O15409 715 aa25■■□□□ 1.59
COL9A3-207ENST00000467819 STAT2P52630 851 aa25■■□□□ 1.59
COL9A3-207ENST00000467819 OAZ1P54368 228 aa25■■□□□ 1.59
COL9A3-207ENST00000467819 C9orf50Q5SZB4 431 aa25■■□□□ 1.59
COL9A3-207ENST00000467819 ZNF467Q7Z7K2 595 aaPredicted RBP25■■□□□ 1.59
COL9A3-207ENST00000467819 INCENPQ9NQS7 918 aa25■■□□□ 1.59
COL9A3-207ENST00000467819 CDKN2AIPQ9NXV6 580 aaPredicted RBP25■■□□□ 1.59
COL9A3-207ENST00000467819 STX8Q9UNK0 236 aa25■■□□□ 1.59
COL9A3-207ENST00000467819 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25■■□□□ 1.59
COL9A3-207ENST00000467819 TSPY2A6NKD2 308 aa24.99■■□□□ 1.59
COL9A3-207ENST00000467819 PQBP1O60828 265 aaKnown RBP24.99■■□□□ 1.59
COL9A3-207ENST00000467819 CLTBP09497 229 aa24.99■■□□□ 1.59
COL9A3-207ENST00000467819 SLC1A4P43007 532 aa24.99■■□□□ 1.59
COL9A3-207ENST00000467819 ACVR2BQ13705 512 aa24.99■■□□□ 1.59
COL9A3-207ENST00000467819 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.99■■□□□ 1.59
COL9A3-207ENST00000467819 FGD4Q96M96 766 aa24.99■■□□□ 1.59
COL9A3-207ENST00000467819 MCCP23508 829 aa24.98■■□□□ 1.59
COL9A3-207ENST00000467819 ACLYP53396 1101 aa24.98■■□□□ 1.59
COL9A3-207ENST00000467819 VPS53Q5VIR6 699 aa24.98■■□□□ 1.59
COL9A3-207ENST00000467819 FAM160B2Q86V87 743 aa24.98■■□□□ 1.59
COL9A3-207ENST00000467819 CHURC1Q8WUH1 139 aa24.98■■□□□ 1.59
COL9A3-207ENST00000467819 GMCL1Q96IK5 515 aa24.98■■□□□ 1.59
COL9A3-207ENST00000467819 FAM161BQ96MY7 647 aa24.98■■□□□ 1.59
COL9A3-207ENST00000467819 TSEN34Q9BSV6 310 aaKnown RBP24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms