RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 MTMR2Q13614 643 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 PDIA6Q15084 440 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 C1orf210Q8IVY1 113 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 ZSCAN29Q8IWY8 852 aaPredicted RBP3.39□□□□□ -1.87
USP40-211ENST00000464956 RETREG2Q8NC44 543 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 PLBD2Q8NHP8 589 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 TBC1D22AQ8WUA7 517 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 GATA6Q92908 595 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 LENG1Q96BZ8 264 aaPredicted RBP3.39□□□□□ -1.87
USP40-211ENST00000464956 VWCEQ96DN2 955 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 UBL7Q96S82 380 aaPredicted RBP3.39□□□□□ -1.87
USP40-211ENST00000464956 MRIQ9BWK5 157 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 RSPH6AQ9H0K4 717 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 SIL1Q9H173 461 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 RXFP3Q9NSD7 469 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.39□□□□□ -1.87
USP40-211ENST00000464956 FBXL21Q9UKT6 434 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 RAB23Q9ULC3 237 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 FAM184BQ9ULE4 1060 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 PCDHGA2Q9Y5H1 932 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 PSME4Q14997 1843 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 KIF20BQ96Q89 1820 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 CAPN8A6NHC0 703 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 C19orf81C9J6K1 198 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 U2SURPO15042 1029 aaKnown RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 LINC01565O15544 149 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 B4GALT4O60513 344 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 EFCAB14O75071 495 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 DUSP11O75319 330 aaKnown RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 PCCAP05165 728 aaPredicted RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 NPR3P17342 541 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 SP100P23497 879 aaPredicted RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 BACE1P56817 501 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 CHRNDQ07001 517 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 TBC1D8BQ0IIM8 1120 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 ITGA7Q13683 1181 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 NFE2L2Q16236 605 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 ZNF528Q3MIS6 628 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 GNASQ5JWF2 1037 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 HHIPL2Q6UWX4 724 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 PRR23CQ6ZRP0 262 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 TMCO2Q7Z6W1 182 aaPredicted RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 TMEM192Q8IY95 271 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 ZNF513Q8N8E2 541 aaPredicted RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 SLC39A7Q92504 469 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 MAML3Q96JK9 1138 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 NEK1Q96PY6 1258 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 C11orf84Q9BUA3 381 aaPredicted RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 LMAN2LQ9H0V9 348 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 OSBPL5Q9H0X9 879 aaPredicted RBP3.38□□□□□ -1.87
USP40-211ENST00000464956 TRPV6Q9H1D0 765 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 EPC1Q9H2F5 836 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 GREM2Q9H772 168 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 PARD6AQ9NPB6 346 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 TSHZ2Q9NRE2 1034 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 CLSPNQ9HAW4 1339 aa3.38□□□□□ -1.87
USP40-211ENST00000464956 MYADML2A6NDP7 307 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 COBLO75128 1261 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 FRAT2O75474 233 aaPredicted RBP3.37□□□□□ -1.87
USP40-211ENST00000464956 CNMDO75829 334 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 C1QL1O75973 258 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 KCNK5O95279 499 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 IQCF3P0C7M6 154 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 SPINK2P20155 84 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 GTF2F1P35269 517 aaKnown RBP eCLIP3.37□□□□□ -1.87
USP40-211ENST00000464956 LIMK1P53667 647 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 DEFB103AP81534 67 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 MAP3K10Q02779 954 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 NFIAQ12857 509 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 DCTN1Q14203 1278 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 CSRP2Q16527 193 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 CDC42EP5Q6NZY7 148 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 FBXO11Q86XK2 927 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 PROSER1Q86XN7 944 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 ABRAQ8N0Z2 381 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 SIX5Q8N196 739 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 EFHBQ8N7U6 833 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 SLC43A3Q8NBI5 491 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 TTLL11Q8NHH1 800 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 SUSD6Q92537 303 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 LRIG1Q96JA1 1093 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 MKNK1Q9BUB5 465 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 SEMA4GQ9NTN9 838 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 CLEC1BQ9P126 229 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 BARX2Q9UMQ3 279 aaPredicted RBP3.37□□□□□ -1.87
USP40-211ENST00000464956 SUGT1Q9Y2Z0 365 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 CHD9Q3L8U1 2897 aa3.37□□□□□ -1.87
USP40-211ENST00000464956 CHD7Q9P2D1 2997 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 NAV2Q8IVL1 2488 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ARAP2Q8WZ64 1704 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 NUP98P52948 1817 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ABHD14A-ACY1A0A1B0GW23 586 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 FSD2A1L4K1 749 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L15C9J2P7 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L10C9JJH3 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L13C9JLJ4 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L11C9JVI0 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L18D6R9N7 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L22D6RA61 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L17D6RBQ6 530 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms