RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 AKR1A1P14550 325 aa27.05■■□□□ 1.92
USP4-208ENST00000464168 ITGB8P26012 769 aa27.05■■□□□ 1.92
USP4-208ENST00000464168 LENG1Q96BZ8 264 aaPredicted RBP27.05■■□□□ 1.92
USP4-208ENST00000464168 EPB41L4AQ9HCS5 686 aaPredicted RBP27.05■■□□□ 1.92
USP4-208ENST00000464168 CLIP2Q9UDT6 1046 aa27.05■■□□□ 1.92
USP4-208ENST00000464168 CNPY2Q9Y2B0 182 aa27.05■■□□□ 1.92
USP4-208ENST00000464168 TACC3Q9Y6A5 838 aa27.05■■□□□ 1.92
USP4-208ENST00000464168 DNAJC25-GNG10A0A024R161 153 aa27.04■■□□□ 1.92
USP4-208ENST00000464168 A0A1W2PQ45 241 aaPredicted RBP27.04■■□□□ 1.92
USP4-208ENST00000464168 A0A1W2PQY0 241 aa27.04■■□□□ 1.92
USP4-208ENST00000464168 ZNF697Q5TEC3 545 aa27.04■■□□□ 1.92
USP4-208ENST00000464168 MSL3Q8N5Y2 521 aaKnown RBP27.04■■□□□ 1.92
USP4-208ENST00000464168 ATP2A1O14983 1001 aa27.03■■□□□ 1.92
USP4-208ENST00000464168 GPAA1O43292 621 aa27.03■■□□□ 1.92
USP4-208ENST00000464168 ADAMTS4O75173 837 aa27.03■■□□□ 1.92
USP4-208ENST00000464168 SNAI1O95863 264 aaPredicted RBP27.03■■□□□ 1.92
USP4-208ENST00000464168 MKL1Q969V6 931 aa27.03■■□□□ 1.92
USP4-208ENST00000464168 DDX11Q96FC9 970 aa27.03■■□□□ 1.92
USP4-208ENST00000464168 EYSQ5T1H1 3165 aa27.02■■□□□ 1.92
USP4-208ENST00000464168 SYNGAP1Q96PV0 1343 aa27.02■■□□□ 1.92
USP4-208ENST00000464168 PRDM1O75626 825 aa27.02■■□□□ 1.92
USP4-208ENST00000464168 ZFYP08048 801 aaPredicted RBP27.02■■□□□ 1.92
USP4-208ENST00000464168 CLTBP09497 229 aa27.02■■□□□ 1.92
USP4-208ENST00000464168 MAMDC4Q6UXC1 1216 aa27.02■■□□□ 1.92
USP4-208ENST00000464168 GPATCH3Q96I76 525 aa27.02■■□□□ 1.92
USP4-208ENST00000464168 TSEN34Q9BSV6 310 aaKnown RBP27.02■■□□□ 1.92
USP4-208ENST00000464168 M0R2C6 588 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 ZBED4O75132 1171 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 GNAT2P19087 354 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 ZNF444Q8N0Y2 327 aaPredicted RBP27.01■■□□□ 1.91
USP4-208ENST00000464168 CPXCR1Q8N123 301 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 CEP95Q96GE4 821 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 SEMA6BQ9H3T3 888 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 MTMR4Q9NYA4 1195 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 FAM184BQ9ULE4 1060 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 PLXNA1Q9UIW2 1896 aa27.01■■□□□ 1.91
USP4-208ENST00000464168 CDH23Q9H251 3354 aa27■■□□□ 1.91
USP4-208ENST00000464168 KIAA0355O15063 1070 aa27■■□□□ 1.91
USP4-208ENST00000464168 PQBP1O60828 265 aaKnown RBP27■■□□□ 1.91
USP4-208ENST00000464168 SLC4A3P48751 1232 aa27■■□□□ 1.91
USP4-208ENST00000464168 TDO2P48775 406 aa27■■□□□ 1.91
USP4-208ENST00000464168 ACLYP53396 1101 aa27■■□□□ 1.91
USP4-208ENST00000464168 SMAD3P84022 425 aaKnown RBP27■■□□□ 1.91
USP4-208ENST00000464168 KLHDC9Q8NEP7 349 aa27■■□□□ 1.91
USP4-208ENST00000464168 KIFC2Q96AC6 838 aa27■■□□□ 1.91
USP4-208ENST00000464168 SLC38A10Q9HBR0 1119 aa27■■□□□ 1.91
USP4-208ENST00000464168 RAVER2Q9HCJ3 691 aaKnown RBP27■■□□□ 1.91
USP4-208ENST00000464168 SYNRGQ9UMZ2 1314 aa26.99■■□□□ 1.91
USP4-208ENST00000464168 PATL2C9JE40 543 aaKnown RBP26.99■■□□□ 1.91
USP4-208ENST00000464168 APPP05067 770 aa26.99■■□□□ 1.91
USP4-208ENST00000464168 EPHB4P54760 987 aa26.99■■□□□ 1.91
USP4-208ENST00000464168 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.99■■□□□ 1.91
USP4-208ENST00000464168 ZNF467Q7Z7K2 595 aaPredicted RBP26.99■■□□□ 1.91
USP4-208ENST00000464168 CDX2Q99626 313 aaPredicted RBP26.99■■□□□ 1.91
USP4-208ENST00000464168 ZNF287Q9HBT7 754 aa26.99■■□□□ 1.91
USP4-208ENST00000464168 FEM1BQ9UK73 627 aa26.99■■□□□ 1.91
USP4-208ENST00000464168 VCANP13611 3396 aa26.98■■□□□ 1.91
USP4-208ENST00000464168 PRUNE2Q8WUY3 3088 aa26.98■■□□□ 1.91
USP4-208ENST00000464168 CCSAPQ6IQ19 270 aaPredicted RBP26.98■■□□□ 1.91
USP4-208ENST00000464168 ANKRD33Q7Z3H0 272 aa26.98■■□□□ 1.91
USP4-208ENST00000464168 PHF6Q8IWS0 365 aaKnown RBP eCLIP26.98■■□□□ 1.91
USP4-208ENST00000464168 IFNL3Q8IZI9 196 aa26.98■■□□□ 1.91
USP4-208ENST00000464168 ZHX1Q9UKY1 873 aaPredicted RBP26.98■■□□□ 1.91
USP4-208ENST00000464168 SYNPO2Q9UMS6 1093 aa26.98■■□□□ 1.91
USP4-208ENST00000464168 TTLL1O95922 423 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 RAG1P15918 1043 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 FAAP100Q0VG06 881 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 KCNA10Q16322 511 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 LRRC47Q8N1G4 583 aaKnown RBP26.97■■□□□ 1.91
USP4-208ENST00000464168 GMCL1P1Q8NEA9 526 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 FGD4Q96M96 766 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 TOX2Q96NM4 488 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 TTYH1Q9H313 450 aaPredicted RBP26.97■■□□□ 1.91
USP4-208ENST00000464168 TMEM39AQ9NV64 488 aa26.97■■□□□ 1.91
USP4-208ENST00000464168 CTDP1Q9Y5B0 961 aaPredicted RBP26.97■■□□□ 1.91
USP4-208ENST00000464168 MOXD2PA6NHM9 499 aa26.96■■□□□ 1.91
USP4-208ENST00000464168 DUSP11O75319 330 aaKnown RBP26.96■■□□□ 1.91
USP4-208ENST00000464168 ACVR2BQ13705 512 aa26.96■■□□□ 1.91
USP4-208ENST00000464168 NUP133Q8WUM0 1156 aa26.96■■□□□ 1.91
USP4-208ENST00000464168 SEC62Q99442 399 aaKnown RBP26.96■■□□□ 1.91
USP4-208ENST00000464168 STARD7Q9NQZ5 370 aa26.96■■□□□ 1.91
USP4-208ENST00000464168 CDKN2AIPQ9NXV6 580 aaPredicted RBP26.96■■□□□ 1.91
USP4-208ENST00000464168 MYADML2A6NDP7 307 aa26.95■■□□□ 1.9
USP4-208ENST00000464168 IRX5P78411 483 aaPredicted RBP26.95■■□□□ 1.9
USP4-208ENST00000464168 ANKRD35Q8N283 1001 aa26.95■■□□□ 1.9
USP4-208ENST00000464168 CHST13Q8NET6 341 aa26.95■■□□□ 1.9
USP4-208ENST00000464168 NEDD1Q8NHV4 660 aa26.95■■□□□ 1.9
USP4-208ENST00000464168 FBXO40Q9UH90 709 aa26.95■■□□□ 1.9
USP4-208ENST00000464168 DCDC2CA8MYV0 355 aa26.94■■□□□ 1.9
USP4-208ENST00000464168 ADCY6O43306 1168 aa26.94■■□□□ 1.9
USP4-208ENST00000464168 OAZ1P54368 228 aa26.94■■□□□ 1.9
USP4-208ENST00000464168 LRRFIP1Q32MZ4 808 aaKnown RBP26.94■■□□□ 1.9
USP4-208ENST00000464168 SLFN13Q68D06 897 aa26.94■■□□□ 1.9
USP4-208ENST00000464168 RNPC3Q96LT9 517 aaKnown RBP26.94■■□□□ 1.9
USP4-208ENST00000464168 COL25A1Q9BXS0 654 aaPredicted RBP26.94■■□□□ 1.9
USP4-208ENST00000464168 ABHD16BQ9H3Z7 469 aa26.94■■□□□ 1.9
USP4-208ENST00000464168 BMP3P12645 472 aa26.93■■□□□ 1.9
USP4-208ENST00000464168 CST5P28325 142 aaPredicted RBP26.93■■□□□ 1.9
USP4-208ENST00000464168 FPGSQ05932 587 aa26.93■■□□□ 1.9
USP4-208ENST00000464168 CCDC144BQ3MJ40 725 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms