RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 STX8Q9UNK0 236 aa16.54■□□□□ 0.24
USP4-206ENST00000461553 ZBED4O75132 1171 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 IGHA2P01877 340 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 COL6A1P12109 1028 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 BMP3P12645 472 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 FXR1P51114 621 aaKnown RBP eCLIP16.53■□□□□ 0.24
USP4-206ENST00000461553 NUCB1Q02818 461 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 NMIQ13287 307 aaPredicted RBP16.53■□□□□ 0.24
USP4-206ENST00000461553 SLFN13Q68D06 897 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 TOMM22Q9NS69 142 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 RBM27Q9P2N5 1060 aaKnown RBP16.53■□□□□ 0.24
USP4-206ENST00000461553 ANAPC4Q9UJX5 808 aa16.53■□□□□ 0.24
USP4-206ENST00000461553 DNM1LO00429 736 aa16.52■□□□□ 0.24
USP4-206ENST00000461553 SEPT4O43236 478 aa16.52■□□□□ 0.24
USP4-206ENST00000461553 RANBP6O60518 1105 aaKnown RBP16.52■□□□□ 0.24
USP4-206ENST00000461553 PGK2P07205 417 aa16.52■□□□□ 0.24
USP4-206ENST00000461553 STAT2P52630 851 aa16.52■□□□□ 0.24
USP4-206ENST00000461553 MFAP1P55081 439 aaKnown RBP16.52■□□□□ 0.24
USP4-206ENST00000461553 IKQ13123 557 aaPredicted RBP16.52■□□□□ 0.24
USP4-206ENST00000461553 ALX1Q15699 326 aa16.52■□□□□ 0.24
USP4-206ENST00000461553 ZNF589Q86UQ0 364 aaPredicted RBP16.52■□□□□ 0.24
USP4-206ENST00000461553 CPXCR1Q8N123 301 aa16.52■□□□□ 0.24
USP4-206ENST00000461553 LAMA3Q16787 3333 aa16.52■□□□□ 0.24
USP4-206ENST00000461553 LRRC37A2A6NM11 1700 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 ATP2A1O14983 1001 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 ORC4O43929 436 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 IGHDP01880 384 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 SLC1A4P43007 532 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 SLC4A3P48751 1232 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 OAZ1P54368 228 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 PLEKHM2Q8IWE5 1019 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 GMCL1Q96IK5 515 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 SLC38A10Q9HBR0 1119 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 NRBP1Q9UHY1 535 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 ZMYND8Q9ULU4 1186 aaPredicted RBP16.51■□□□□ 0.23
USP4-206ENST00000461553 DIS3Q9Y2L1 958 aaKnown RBP16.51■□□□□ 0.23
USP4-206ENST00000461553 LTBP2Q14767 1821 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 MYH6P13533 1939 aa16.51■□□□□ 0.23
USP4-206ENST00000461553 SZT2Q5T011 3432 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 TMEM232C9JQI7 657 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 KBTBD13C9JR72 458 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 FDX1P10109 184 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 HSPD1P10809 573 aaKnown RBP16.5■□□□□ 0.23
USP4-206ENST00000461553 RRP12Q5JTH9 1297 aaKnown RBP16.5■□□□□ 0.23
USP4-206ENST00000461553 FAM160B2Q86V87 743 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 TINF2Q9BSI4 451 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 PRO3102Q9H379 93 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 OSBPL3Q9H4L5 887 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 RAVER2Q9HCJ3 691 aaKnown RBP16.5■□□□□ 0.23
USP4-206ENST00000461553 DIAPH3Q9NSV4 1193 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 FBXO40Q9UH90 709 aa16.5■□□□□ 0.23
USP4-206ENST00000461553 LCTP09848 1927 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 A0A1W2PPC1 479 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 NMT2O60551 498 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 FGAP02671 866 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 LRRC26Q2I0M4 334 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 ZNF792Q3KQV3 632 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 ANO1Q5XXA6 986 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 ARRDC4Q8NCT1 418 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 CHURC1Q8WUH1 139 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 DDX11Q96FC9 970 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 SENP6Q9GZR1 1112 aaPredicted RBP16.49■□□□□ 0.23
USP4-206ENST00000461553 CNPY2Q9Y2B0 182 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 RIPK3Q9Y572 518 aa16.49■□□□□ 0.23
USP4-206ENST00000461553 SUPT16HQ9Y5B9 1047 aaKnown RBP16.49■□□□□ 0.23
USP4-206ENST00000461553 HIP1O00291 1037 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 MYCNP04198 464 aaPredicted RBP16.48■□□□□ 0.23
USP4-206ENST00000461553 RARBP10826 455 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 PCP11498 1178 aaKnown RBP16.48■□□□□ 0.23
USP4-206ENST00000461553 SYN1P17600 705 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 SDSP20132 328 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 MCCP23508 829 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 HAND2P61296 217 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 CCDC96Q2M329 555 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 PRAMEF19Q5SWL8 479 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 GJC2Q5T442 439 aaPredicted RBP16.48■□□□□ 0.23
USP4-206ENST00000461553 MSL3Q8N5Y2 521 aaKnown RBP16.48■□□□□ 0.23
USP4-206ENST00000461553 CHST13Q8NET6 341 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 INCENPQ9NQS7 918 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 IL17RBQ9NRM6 502 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 HOMER2Q9NSB8 354 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 MTMR7Q9Y216 660 aa16.48■□□□□ 0.23
USP4-206ENST00000461553 SYNGAP1Q96PV0 1343 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 FGRP09769 529 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 AKR1A1P14550 325 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 KCTD1Q719H9 257 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.47■□□□□ 0.23
USP4-206ENST00000461553 ANKRD35Q8N283 1001 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 STAG1Q8WVM7 1258 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 CHMP4CQ96CF2 233 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 RNF41Q9H4P4 317 aaPredicted RBP16.47■□□□□ 0.23
USP4-206ENST00000461553 ACAD9Q9H845 621 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 PCDH10Q9P2E7 1040 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 TACC3Q9Y6A5 838 aa16.47■□□□□ 0.23
USP4-206ENST00000461553 PLA2G6O60733 806 aa16.46■□□□□ 0.23
USP4-206ENST00000461553 ATN1P54259 1190 aaPredicted RBP16.46■□□□□ 0.23
USP4-206ENST00000461553 CWC27Q6UX04 472 aaKnown RBP16.46■□□□□ 0.23
USP4-206ENST00000461553 MFSD6Q6ZSS7 791 aa16.46■□□□□ 0.23
USP4-206ENST00000461553 RASGRP2Q7LDG7 609 aa16.46■□□□□ 0.23
USP4-206ENST00000461553 DCAF4Q8WV16 495 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms