RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SPATA5Q8NB90 893 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 ACRBPQ8NEB7 543 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 CPLX3Q8WVH0 158 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 LPIN2Q92539 896 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 SYMPKQ92797 1274 aaKnown RBP9.59□□□□□ -0.87
VPS50-208ENST00000458707 EPSTI1Q96J88 318 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 PHF20Q9BVI0 1012 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 RBM28Q9NW13 759 aaKnown RBP9.59□□□□□ -0.87
VPS50-208ENST00000458707 MKRN1Q9UHC7 482 aaKnown RBP9.59□□□□□ -0.87
VPS50-208ENST00000458707 LCMT1Q9UIC8 334 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 IQSEC3Q9UPP2 1182 aaPredicted RBP9.59□□□□□ -0.87
VPS50-208ENST00000458707 RRP15Q9Y3B9 282 aaKnown RBP9.59□□□□□ -0.87
VPS50-208ENST00000458707 SPATA31A3Q5VYP0 1347 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 MROH5Q6ZUA9 1318 aa9.59□□□□□ -0.87
VPS50-208ENST00000458707 RTL9Q8NET4 1388 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 ERICH2A1L162 156 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 RIMBP2O15034 1052 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 N4BP1O75113 896 aaKnown RBP9.58□□□□□ -0.88
VPS50-208ENST00000458707 ABL1P00519 1130 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 AFMP43652 599 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 AARSP49588 968 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS50-208ENST00000458707 FUT2Q10981 343 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 KRT31Q15323 416 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 SEC23AQ15436 765 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 E2F4Q16254 413 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 PKN1Q16512 942 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 KLHL10Q6JEL2 608 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 ZNF662Q6ZS27 426 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 SYNE4Q8N205 404 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 MAGEB6Q8N7X4 407 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 ACBD3Q9H3P7 528 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 ARMT1Q9H993 441 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 SUGCTQ9HAC7 445 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 RWDD2AQ9UIY3 292 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 MYO6Q9UM54 1294 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 FAN1Q9Y2M0 1017 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 BAZ2BQ9UIF8 2168 aaKnown RBP9.58□□□□□ -0.88
VPS50-208ENST00000458707 CCDC88AQ3V6T2 1871 aa9.58□□□□□ -0.88
VPS50-208ENST00000458707 PSMD14O00487 310 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 PRPF3O43395 683 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 KIF1CO43896 1103 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 RHOXF2BP0C7M4 288 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 XBP1P17861 261 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 KRT2P35908 639 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 COPB1P53618 953 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 TRAPPC11Q7Z392 1133 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 NOA1Q8NC60 698 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 TNFRSF25Q93038 417 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 RHOXF2Q9BQY4 288 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 PYM1Q9BRP8 204 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 NACAP1Q9BZK3 213 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 RNF41Q9H4P4 317 aaPredicted RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 XDHP47989 1333 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 LRRIQ3A6PVS8 624 aaPredicted RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 RNF225M0QZC1 329 aaPredicted RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 TRIM66O15016 1216 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 N4BP3O15049 544 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 PDE8AO60658 829 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 TFRCP02786 760 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 MCM3P25205 808 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 RXRBP28702 533 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 CASP1P29466 404 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 ATP2C1P98194 919 aaPredicted RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 SEMA3FQ13275 785 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 RASGRF1Q13972 1273 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 HSP90B2PQ58FF3 399 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 TCP11X2Q5H9J9 407 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 EARS2Q5JPH6 523 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 PDXDC2PQ6P474 469 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 SMYD4Q8IYR2 804 aaPredicted RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 CMTR1Q8N1G2 835 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 GPATCH11Q8N954 259 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 CTCFLQ8NI51 663 aaPredicted RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 DDX17Q92841 729 aaKnown RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 ZKSCAN3Q9BRR0 538 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 DONSONQ9NYP3 566 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 ANAPC4Q9UJX5 808 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 CTNND2Q9UQB3 1225 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 CICQ96RK0 1608 aaPredicted RBP9.57□□□□□ -0.88
VPS50-208ENST00000458707 SCN7AQ01118 1682 aa9.57□□□□□ -0.88
VPS50-208ENST00000458707 KIAA1551Q9HCM1 1747 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 SLIT2O94813 1529 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 TARSL2A2RTX5 802 aaKnown RBP9.56□□□□□ -0.88
VPS50-208ENST00000458707 IRS4O14654 1257 aaPredicted RBP9.56□□□□□ -0.88
VPS50-208ENST00000458707 PRKAB2O43741 272 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 GTPBP6O43824 516 aaPredicted RBP9.56□□□□□ -0.88
VPS50-208ENST00000458707 PRPF6O94906 941 aaKnown RBP9.56□□□□□ -0.88
VPS50-208ENST00000458707 ATF3P18847 181 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 ATP2B1P20020 1258 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 CCT6AP40227 531 aaKnown RBP9.56□□□□□ -0.88
VPS50-208ENST00000458707 TDO2P48775 406 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 USP14P54578 494 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 NPY5RQ15761 445 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 HLFQ16534 295 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 C10orf67Q8IYJ2 551 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 LCORLQ8N3X6 602 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 CCDC82Q8N4S0 544 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 CCDC148Q8NFR7 591 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 RPGRIP1Q96KN7 1286 aa9.56□□□□□ -0.88
VPS50-208ENST00000458707 HAUS4Q9H6D7 363 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms