RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 TNFAIP1Q13829 316 aa10.36□□□□□ -0.75
VPS50-207ENST00000458530 SLC4A8Q2Y0W8 1093 aa10.36□□□□□ -0.75
VPS50-207ENST00000458530 FOXD4L5Q5VV16 416 aaPredicted RBP10.36□□□□□ -0.75
VPS50-207ENST00000458530 ATL3Q6DD88 541 aa10.36□□□□□ -0.75
VPS50-207ENST00000458530 FOXP4Q8IVH2 680 aaPredicted RBP10.36□□□□□ -0.75
VPS50-207ENST00000458530 FOXD4L4Q8WXT5 416 aaPredicted RBP10.36□□□□□ -0.75
VPS50-207ENST00000458530 DYNLL2Q96FJ2 89 aa10.36□□□□□ -0.75
VPS50-207ENST00000458530 LZTS2Q9BRK4 669 aa10.36□□□□□ -0.75
VPS50-207ENST00000458530 RNF26Q9BY78 433 aaPredicted RBP10.36□□□□□ -0.75
VPS50-207ENST00000458530 DDX4Q9NQI0 724 aaKnown RBP10.36□□□□□ -0.75
VPS50-207ENST00000458530 SCAF8Q9UPN6 1271 aaKnown RBP10.36□□□□□ -0.75
VPS50-207ENST00000458530 PTPN22Q9Y2R2 807 aa10.36□□□□□ -0.75
VPS50-207ENST00000458530 ATAD5Q96QE3 1844 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 MBD3O95983 291 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 TOP1P11387 765 aaKnown RBP10.35□□□□□ -0.75
VPS50-207ENST00000458530 SAFBQ15424 915 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS50-207ENST00000458530 VARS2Q5ST30 1063 aaKnown RBP10.35□□□□□ -0.75
VPS50-207ENST00000458530 BRAPQ7Z569 592 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 CCDC144CPQ8IYA2 1237 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 PNMA1Q8ND90 353 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 MYL10Q9BUA6 226 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 TDRD3Q9H7E2 651 aaKnown RBP10.35□□□□□ -0.75
VPS50-207ENST00000458530 HERC5Q9UII4 1024 aaKnown RBP10.35□□□□□ -0.75
VPS50-207ENST00000458530 TRIM17Q9Y577 477 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 SSC5DA1L4H1 1573 aa10.35□□□□□ -0.75
VPS50-207ENST00000458530 MANSC4A6NHS7 340 aaPredicted RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 UNCXA6NJT0 531 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 IGF2BP3O00425 579 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS50-207ENST00000458530 ZBTB48P10074 688 aaPredicted RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 EN2P19622 333 aaPredicted RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 RXRAP19793 462 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 CDC27P30260 824 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 ADD1P35611 737 aaKnown RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 TROAPQ12815 778 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 NFIAQ12857 509 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 GNL2Q13823 731 aaKnown RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 FAM83AQ86UY5 434 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 RAB11FIP4Q86YS3 637 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 FAM177A1Q8N128 213 aaPredicted RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 TMEM87AQ8NBN3 555 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 SLC44A5Q8NCS7 719 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 FAM151AQ8WW52 585 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 ZNF333Q96JL9 665 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 ZNF396Q96N95 335 aaPredicted RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 ALG1Q9BT22 464 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 SLC26A6Q9BXS9 759 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 KRTAP3-3Q9BYR6 98 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 KRTAP3-2Q9BYR7 98 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 SCAND2PQ9GZW5 306 aaPredicted RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 SENP2Q9HC62 589 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 ZNF70Q9UC06 446 aaPredicted RBP10.34□□□□□ -0.75
VPS50-207ENST00000458530 FAM198AQ9UFP1 575 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 CFAP45Q9UL16 551 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 STX8Q9UNK0 236 aa10.34□□□□□ -0.75
VPS50-207ENST00000458530 TESPA1A2RU30 521 aaPredicted RBP10.33□□□□□ -0.76
VPS50-207ENST00000458530 SMIM22K7EJ46 135 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 GTPBP6O43824 516 aaPredicted RBP10.33□□□□□ -0.76
VPS50-207ENST00000458530 TRAK2O60296 914 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 TTLL1O95922 423 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 NF2P35240 595 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 TCP10Q12799 353 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 GRM4Q14833 912 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 NTRK3Q16288 839 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 RCSD1Q6JBY9 416 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 TMTC3Q6ZXV5 915 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 ARMC9Q7Z3E5 817 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 FBXO18Q8NFZ0 1043 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 NKX2-3Q8TAU0 364 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 SYAP1Q96A49 352 aaPredicted RBP10.33□□□□□ -0.76
VPS50-207ENST00000458530 HOOK2Q96ED9 719 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 PRMT6Q96LA8 375 aaPredicted RBP10.33□□□□□ -0.76
VPS50-207ENST00000458530 BRMS1Q9HCU9 246 aa10.33□□□□□ -0.76
VPS50-207ENST00000458530 RTN4Q9NQC3 1192 aaKnown RBP10.33□□□□□ -0.76
VPS50-207ENST00000458530 FAM217BQ9NTX9 383 aaPredicted RBP10.33□□□□□ -0.76
VPS50-207ENST00000458530 MPHOSPH10O00566 681 aaKnown RBP10.32□□□□□ -0.76
VPS50-207ENST00000458530 PRPF3O43395 683 aaKnown RBP10.32□□□□□ -0.76
VPS50-207ENST00000458530 NMT2O60551 498 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 PARP1P09874 1014 aaKnown RBP10.32□□□□□ -0.76
VPS50-207ENST00000458530 FDPSP14324 419 aaKnown RBP10.32□□□□□ -0.76
VPS50-207ENST00000458530 SHMT1P34896 483 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 NOVP48745 357 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 RESTQ13127 1097 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 KLHL40Q2TBA0 621 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 CERKLQ49MI3 558 aaPredicted RBP10.32□□□□□ -0.76
VPS50-207ENST00000458530 ASPRV1Q53RT3 343 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 TMEM179Q6ZVK1 233 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 FERMT3Q86UX7 667 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 METTL16Q86W50 562 aaKnown RBP10.32□□□□□ -0.76
VPS50-207ENST00000458530 PHKBQ93100 1093 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 CEP95Q96GE4 821 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 ERO1AQ96HE7 468 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 TMEM47Q9BQJ4 181 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 VEZTQ9HBM0 779 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 CABP5Q9NP86 173 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 IL17RBQ9NRM6 502 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 MTMR4Q9NYA4 1195 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 SYNPO2Q9UMS6 1093 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 DDX49Q9Y6V7 483 aaKnown RBP10.32□□□□□ -0.76
VPS50-207ENST00000458530 ELP1O95163 1332 aa10.32□□□□□ -0.76
VPS50-207ENST00000458530 CNTNAP5Q8WYK1 1306 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms