RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PRPHP41219 470 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 SEMA3FQ13275 785 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 HSP90AA4PQ58FG1 418 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 MTRQ99707 1265 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 COA1Q9GZY4 146 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 RMND1Q9NWS8 449 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 NCBP1Q09161 790 aaKnown RBP17.07■□□□□ 0.32
LDLR-202ENST00000455727 RASGRP4Q8TDF6 673 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 ATP6V0A2Q9Y487 856 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 PLIN4Q96Q06 1357 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 QSER1Q2KHR3 1735 aa17.06■□□□□ 0.32
LDLR-202ENST00000455727 ANKRD31Q8N7Z5 1873 aa17.06■□□□□ 0.32
LDLR-202ENST00000455727 TC2NQ8N9U0 490 aa17.06■□□□□ 0.32
LDLR-202ENST00000455727 DAGLAQ9Y4D2 1042 aa17.06■□□□□ 0.32
LDLR-202ENST00000455727 PPEF1O14829 653 aaPredicted RBP17.05■□□□□ 0.32
LDLR-202ENST00000455727 ZSCAN12O43309 604 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 MYL1P05976 194 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 BAG1Q99933 345 aaPredicted RBP17.05■□□□□ 0.32
LDLR-202ENST00000455727 CCSER1Q9C0I3 900 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 QTRT2Q9H974 415 aaKnown RBP17.05■□□□□ 0.32
LDLR-202ENST00000455727 DISC1Q9NRI5 854 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 BRWD3Q6RI45 1802 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 GNA11P29992 359 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 ETF1P62495 437 aaKnown RBP17.05■□□□□ 0.32
LDLR-202ENST00000455727 INF2Q27J81 1249 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 ZNF658Q5TYW1 1059 aaPredicted RBP17.05■□□□□ 0.32
LDLR-202ENST00000455727 KLHL10Q6JEL2 608 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 KRT25Q7Z3Z0 450 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 RRP36Q96EU6 259 aaKnown RBP17.05■□□□□ 0.32
LDLR-202ENST00000455727 CEP95Q96GE4 821 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 L2HGDHQ9H9P8 463 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 ADD3Q9UEY8 706 aaKnown RBP17.05■□□□□ 0.32
LDLR-202ENST00000455727 RWDD2AQ9UIY3 292 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 NRXN2Q9P2S2 1712 aa17.05■□□□□ 0.32
LDLR-202ENST00000455727 GOLGA8HP0CJ92 632 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 STAT6P42226 847 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 GTF2IP78347 998 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 PDCL2Q8N4E4 241 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 STAMQ92783 540 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 C6orf50Q9HD87 102 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 MYH8P13535 1937 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 GOLGA6L9A6NEM1 432 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 LRRC10BA6NIK2 292 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 hCG_1984214I3L0E3 225 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 RPN1P04843 607 aaKnown RBP17.04■□□□□ 0.32
LDLR-202ENST00000455727 PBX1P40424 430 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 GABPAQ06546 454 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 ORC2Q13416 577 aaPredicted RBP17.04■□□□□ 0.32
LDLR-202ENST00000455727 KRT27Q7Z3Y8 459 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 REXO1L1PQ8IX06 675 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 ZNF713Q8N859 430 aaPredicted RBP17.04■□□□□ 0.32
LDLR-202ENST00000455727 AK8Q96MA6 479 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 CCDC94Q9BW85 323 aaPredicted RBP17.04■□□□□ 0.32
LDLR-202ENST00000455727 BLZF1Q9H2G9 400 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 TMEM60Q9H2L4 133 aa17.04■□□□□ 0.32
LDLR-202ENST00000455727 PHLPP2Q6ZVD8 1323 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 ESYT2A0FGR8 921 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 HSPA1LP34931 641 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 NAPAP54920 295 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 STX17P56962 302 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 FILIP1LQ4L180 1135 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 SMYD4Q8IYR2 804 aaPredicted RBP17.03■□□□□ 0.32
LDLR-202ENST00000455727 ERO1AQ96HE7 468 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 PANX2Q96RD6 677 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 RIOX1Q9H6W3 641 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 SEC63Q9UGP8 760 aaKnown RBP17.03■□□□□ 0.32
LDLR-202ENST00000455727 TRIM37O94972 964 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 PTPN21Q16825 1174 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 RRAGBQ5VZM2 374 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 USP17L2Q6R6M4 530 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 SYT10Q6XYQ8 523 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 CUEDC2Q9H467 287 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 LIMA1Q9UHB6 759 aaKnown RBP17.03■□□□□ 0.32
LDLR-202ENST00000455727 MTMR7Q9Y216 660 aa17.03■□□□□ 0.32
LDLR-202ENST00000455727 SMCO2A6NFE2 343 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 SLU7O95391 586 aaKnown RBP17.02■□□□□ 0.32
LDLR-202ENST00000455727 UBA7P41226 1012 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 SPAG1Q07617 926 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 GOLGA8FQ08AF8 430 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 GOLGA8DPQ0D2H9 430 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 KCNB1Q14721 858 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 KARSQ15046 597 aaKnown RBP17.02■□□□□ 0.32
LDLR-202ENST00000455727 NONOQ15233 471 aaKnown RBP eCLIP17.02■□□□□ 0.325e-7■□□□□ 10.7
LDLR-202ENST00000455727 TXNRD1Q16881 649 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 NAALADL2Q58DX5 795 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 TRIM65Q6PJ69 517 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 HOMER1Q86YM7 354 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 PROM2Q8N271 834 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 MAGEF1Q9HAY2 307 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 MTMR4Q9NYA4 1195 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 C10orf71Q711Q0 1435 aa17.02■□□□□ 0.32
LDLR-202ENST00000455727 ITIH6Q6UXX5 1313 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 MYO3BQ8WXR4 1341 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 AKR1B15C9JRZ8 316 aaPredicted RBP17.02■□□□□ 0.31
LDLR-202ENST00000455727 SRGNP10124 158 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 PAK1Q13153 545 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 CCDC93Q567U6 631 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 NLGN1Q8N2Q7 840 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 ZC3H12CQ9C0D7 883 aaKnown RBP17.02■□□□□ 0.31
LDLR-202ENST00000455727 ZNF215Q9UL58 517 aaPredicted RBP17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms