RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CYP2C19P33261 490 aa25.1■■□□□ 1.61
HMGB3-205ENST00000455596 HAND2P61296 217 aa25.1■■□□□ 1.61
HMGB3-205ENST00000455596 SNRNP48Q6IEG0 339 aaKnown RBP25.1■■□□□ 1.61
HMGB3-205ENST00000455596 DIS3LQ8TF46 1054 aaKnown RBP25.1■■□□□ 1.61
HMGB3-205ENST00000455596 GMCL1Q96IK5 515 aa25.1■■□□□ 1.61
HMGB3-205ENST00000455596 TEX13BQ9BXU2 312 aa25.1■■□□□ 1.61
HMGB3-205ENST00000455596 ISY1Q9ULR0 285 aaKnown RBP25.1■■□□□ 1.61
HMGB3-205ENST00000455596 ATP2A1O14983 1001 aa25.09■■□□□ 1.61
HMGB3-205ENST00000455596 IGHA2P01877 340 aa25.09■■□□□ 1.61
HMGB3-205ENST00000455596 PCP11498 1178 aaKnown RBP25.09■■□□□ 1.61
HMGB3-205ENST00000455596 SLC1A4P43007 532 aa25.09■■□□□ 1.61
HMGB3-205ENST00000455596 KCTD2Q14681 263 aa25.09■■□□□ 1.61
HMGB3-205ENST00000455596 TTC22Q5TAA0 569 aa25.09■■□□□ 1.61
HMGB3-205ENST00000455596 TMEM232C9JQI7 657 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 CNGA1P29973 690 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 NOVP48745 357 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 STAT2P52630 851 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 AKNAD1Q5T1N1 836 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 LHX8Q68G74 356 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 MFSD6Q6ZSS7 791 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 FAM160B2Q86V87 743 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 CPXCR1Q8N123 301 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 STAG1Q8WVM7 1258 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 SLC38A10Q9HBR0 1119 aa25.08■■□□□ 1.61
HMGB3-205ENST00000455596 MSCO60682 206 aa25.07■■□□□ 1.6
HMGB3-205ENST00000455596 FDX1P10109 184 aa25.07■■□□□ 1.6
HMGB3-205ENST00000455596 MCCP23508 829 aa25.07■■□□□ 1.6
HMGB3-205ENST00000455596 CHURC1Q8WUH1 139 aa25.07■■□□□ 1.6
HMGB3-205ENST00000455596 MAML3Q96JK9 1138 aa25.07■■□□□ 1.6
HMGB3-205ENST00000455596 NBPF3Q9H094 633 aa25.07■■□□□ 1.6
HMGB3-205ENST00000455596 RNF41Q9H4P4 317 aaPredicted RBP25.07■■□□□ 1.6
HMGB3-205ENST00000455596 TCP11L1Q9NUJ3 509 aa25.07■■□□□ 1.6
HMGB3-205ENST00000455596 H0YGN5 161 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 ZNF213O14771 459 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 CYBAP13498 195 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 GSPT1P15170 499 aaKnown RBP25.06■■□□□ 1.6
HMGB3-205ENST00000455596 SLC4A3P48751 1232 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 MNX1P50219 401 aaPredicted RBP25.06■■□□□ 1.6
HMGB3-205ENST00000455596 OAZ1P54368 228 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 IKQ13123 557 aaPredicted RBP25.06■■□□□ 1.6
HMGB3-205ENST00000455596 CHMP4CQ96CF2 233 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 C11orf49Q9H6J7 331 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 RAVER2Q9HCJ3 691 aaKnown RBP25.06■■□□□ 1.6
HMGB3-205ENST00000455596 DDX20Q9UHI6 824 aaKnown RBP25.06■■□□□ 1.6
HMGB3-205ENST00000455596 RIPK3Q9Y572 518 aa25.06■■□□□ 1.6
HMGB3-205ENST00000455596 PGK2P07205 417 aa25.05■■□□□ 1.6
HMGB3-205ENST00000455596 RCSD1Q6JBY9 416 aa25.05■■□□□ 1.6
HMGB3-205ENST00000455596 TBC1D10CQ8IV04 446 aa25.05■■□□□ 1.6
HMGB3-205ENST00000455596 TRPV1Q8NER1 839 aa25.05■■□□□ 1.6
HMGB3-205ENST00000455596 DSCC1Q9BVC3 393 aa25.05■■□□□ 1.6
HMGB3-205ENST00000455596 DIS3Q9Y2L1 958 aaKnown RBP25.05■■□□□ 1.6
HMGB3-205ENST00000455596 NR2E3Q9Y5X4 410 aa25.05■■□□□ 1.6
HMGB3-205ENST00000455596 SMCHD1A6NHR9 2005 aa25.04■■□□□ 1.6
HMGB3-205ENST00000455596 EVI5O60447 810 aa25.04■■□□□ 1.6
HMGB3-205ENST00000455596 PLA2G6O60733 806 aa25.04■■□□□ 1.6
HMGB3-205ENST00000455596 KCTD1Q719H9 257 aa25.04■■□□□ 1.6
HMGB3-205ENST00000455596 MTMR7Q9Y216 660 aa25.04■■□□□ 1.6
HMGB3-205ENST00000455596 TOP1P11387 765 aaKnown RBP25.03■■□□□ 1.6
HMGB3-205ENST00000455596 ZNF792Q3KQV3 632 aa25.03■■□□□ 1.6
HMGB3-205ENST00000455596 DCAF4Q8WV16 495 aa25.03■■□□□ 1.6
HMGB3-205ENST00000455596 ESR2Q92731 530 aa25.03■■□□□ 1.6
HMGB3-205ENST00000455596 DDX11Q96FC9 970 aa25.03■■□□□ 1.6
HMGB3-205ENST00000455596 MCM3APO60318 1980 aa25.02■■□□□ 1.6
HMGB3-205ENST00000455596 CHST13Q8NET6 341 aa25.02■■□□□ 1.6
HMGB3-205ENST00000455596 TMEM47Q9BQJ4 181 aa25.02■■□□□ 1.6
HMGB3-205ENST00000455596 FBXO40Q9UH90 709 aa25.02■■□□□ 1.6
HMGB3-205ENST00000455596 CTNNA3Q9UI47 895 aa25.02■■□□□ 1.6
HMGB3-205ENST00000455596 NEDD4P46934 1319 aa25.02■■□□□ 1.6
HMGB3-205ENST00000455596 NT5C2P49902 561 aa25.01■■□□□ 1.59
HMGB3-205ENST00000455596 IMMTQ16891 758 aaKnown RBP25.01■■□□□ 1.59
HMGB3-205ENST00000455596 CCDC96Q2M329 555 aa25.01■■□□□ 1.59
HMGB3-205ENST00000455596 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.01■■□□□ 1.59
HMGB3-205ENST00000455596 RASGRP2Q7LDG7 609 aa25.01■■□□□ 1.59
HMGB3-205ENST00000455596 TTC14Q96N46 770 aa25.01■■□□□ 1.59
HMGB3-205ENST00000455596 RAD50Q92878 1312 aa25.01■■□□□ 1.59
HMGB3-205ENST00000455596 SEPT4O43236 478 aa25■■□□□ 1.59
HMGB3-205ENST00000455596 PRAMEF19Q5SWL8 479 aa25■■□□□ 1.59
HMGB3-205ENST00000455596 RUFY2Q8WXA3 655 aa25■■□□□ 1.59
HMGB3-205ENST00000455596 TINF2Q9BSI4 451 aa25■■□□□ 1.59
HMGB3-205ENST00000455596 NRBP1Q9UHY1 535 aa25■■□□□ 1.59
HMGB3-205ENST00000455596 PFASO15067 1338 aa25■■□□□ 1.59
HMGB3-205ENST00000455596 COL6A1P12109 1028 aa24.99■■□□□ 1.59
HMGB3-205ENST00000455596 ANKRD35Q8N283 1001 aa24.99■■□□□ 1.59
HMGB3-205ENST00000455596 IL25Q9H293 177 aa24.99■■□□□ 1.59
HMGB3-205ENST00000455596 PRR12Q9ULL5 1215 aa24.99■■□□□ 1.59
HMGB3-205ENST00000455596 ZNF536O15090 1300 aa24.98■■□□□ 1.59
HMGB3-205ENST00000455596 DNAJC25-GNG10A0A024R161 153 aa24.98■■□□□ 1.59
HMGB3-205ENST00000455596 MSL3Q8N5Y2 521 aaKnown RBP24.98■■□□□ 1.59
HMGB3-205ENST00000455596 HOMER2Q9NSB8 354 aa24.98■■□□□ 1.59
HMGB3-205ENST00000455596 TKFCQ3LXA3 575 aa24.97■■□□□ 1.59
HMGB3-205ENST00000455596 HABP4Q5JVS0 413 aaKnown RBP24.97■■□□□ 1.59
HMGB3-205ENST00000455596 IQCA1Q86XH1 822 aa24.97■■□□□ 1.59
HMGB3-205ENST00000455596 AGBL1Q96MI9 1066 aa24.97■■□□□ 1.59
HMGB3-205ENST00000455596 ZKSCAN3Q9BRR0 538 aa24.97■■□□□ 1.59
HMGB3-205ENST00000455596 ACAD9Q9H845 621 aa24.97■■□□□ 1.59
HMGB3-205ENST00000455596 COLQQ9Y215 455 aaPredicted RBP24.97■■□□□ 1.59
HMGB3-205ENST00000455596 FRMPD2Q68DX3 1309 aaPredicted RBP24.96■■□□□ 1.59
HMGB3-205ENST00000455596 B4E1Z4 1266 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 DNM1LO00429 736 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 KDM4AO75164 1064 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms