RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 TRIM29Q14134 588 aa18.2■□□□□ 0.5
SNX17-204ENST00000453453 NBPF11Q86T75 865 aa18.2■□□□□ 0.5
SNX17-204ENST00000453453 SIAH1Q8IUQ4 282 aa18.2■□□□□ 0.5
SNX17-204ENST00000453453 STAG2Q8N3U4 1231 aa18.2■□□□□ 0.5
SNX17-204ENST00000453453 SRBD1Q8N5C6 995 aaKnown RBP18.2■□□□□ 0.5
SNX17-204ENST00000453453 ANKRD7Q92527 254 aa18.2■□□□□ 0.5
SNX17-204ENST00000453453 ALG1Q9BT22 464 aa18.2■□□□□ 0.5
SNX17-204ENST00000453453 F5H6K3 240 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 CTIFO43310 598 aaKnown RBP18.19■□□□□ 0.5
SNX17-204ENST00000453453 GOLGA8HP0CJ92 632 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 CCDC192P0DO97 292 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 XBP1P17861 261 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 KLRC3Q07444 240 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 ZNF543Q08ER8 600 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 PRKG1Q13976 671 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 TTLL12Q14166 644 aaPredicted RBP18.19■□□□□ 0.5
SNX17-204ENST00000453453 NOL9Q5SY16 702 aaKnown RBP18.19■□□□□ 0.5
SNX17-204ENST00000453453 RGS22Q8NE09 1264 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 SPZ1Q9BXG8 430 aa18.19■□□□□ 0.5
SNX17-204ENST00000453453 FRMPD2Q68DX3 1309 aaPredicted RBP18.18■□□□□ 0.5
SNX17-204ENST00000453453 USP2O75604 605 aaPredicted RBP18.18■□□□□ 0.5
SNX17-204ENST00000453453 ZSCAN20P17040 1043 aaPredicted RBP18.18■□□□□ 0.5
SNX17-204ENST00000453453 MAP3K9P80192 1104 aa18.18■□□□□ 0.5
SNX17-204ENST00000453453 FUT2Q10981 343 aa18.18■□□□□ 0.5
SNX17-204ENST00000453453 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.18■□□□□ 0.59e-8■■□□□ 11.5
SNX17-204ENST00000453453 ZNF526Q8TF50 670 aaPredicted RBP18.18■□□□□ 0.5
SNX17-204ENST00000453453 GMCL1Q96IK5 515 aa18.18■□□□□ 0.5
SNX17-204ENST00000453453 GPCPD1Q9NPB8 672 aa18.18■□□□□ 0.5
SNX17-204ENST00000453453 CSADQ9Y600 493 aa18.18■□□□□ 0.5
SNX17-204ENST00000453453 V9GY48 417 aaPredicted RBP18.18■□□□□ 0.5
SNX17-204ENST00000453453 OTOFQ9HC10 1997 aa18.18■□□□□ 0.5
SNX17-204ENST00000453453 A0A1W2PRG0 241 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 NDUFB10O96000 172 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 FOSBP53539 338 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 MAP1SQ66K74 1059 aaPredicted RBP18.17■□□□□ 0.5
SNX17-204ENST00000453453 ARMC9Q7Z3E5 817 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.17■□□□□ 0.5
SNX17-204ENST00000453453 ACER1Q8TDN7 264 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 ZKSCAN4Q969J2 545 aaPredicted RBP18.17■□□□□ 0.5
SNX17-204ENST00000453453 VCPKMTQ9H867 229 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 TTC12Q9H892 705 aaPredicted RBP18.17■□□□□ 0.5
SNX17-204ENST00000453453 GDPD2Q9HCC8 539 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.17■□□□□ 0.5
SNX17-204ENST00000453453 MTMR6Q9Y217 621 aa18.17■□□□□ 0.5
SNX17-204ENST00000453453 PAPPA2Q9BXP8 1791 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 POTEIP0CG38 1075 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 POTEJP0CG39 1038 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 BMP3P12645 472 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 ECE1P42892 770 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 RASGRP2Q7LDG7 609 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 RRP36Q96EU6 259 aaKnown RBP18.16■□□□□ 0.5
SNX17-204ENST00000453453 NMRK2Q9NPI5 230 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 SEC63Q9UGP8 760 aaKnown RBP18.16■□□□□ 0.5
SNX17-204ENST00000453453 FZD1Q9UP38 647 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 PTPRAP18433 802 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 USP14P54578 494 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 DLK2Q6UY11 383 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 KCTD1Q719H9 257 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 FAM200AQ8TCP9 573 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 WDR18Q9BV38 432 aa18.16■□□□□ 0.5
SNX17-204ENST00000453453 BAZ2BQ9UIF8 2168 aaKnown RBP18.15■□□□□ 0.5
SNX17-204ENST00000453453 PHIPQ8WWQ0 1821 aa18.15■□□□□ 0.5
SNX17-204ENST00000453453 USP17L10C9JJH3 530 aa18.15■□□□□ 0.5
SNX17-204ENST00000453453 CAVIN2O95810 425 aa18.15■□□□□ 0.5
SNX17-204ENST00000453453 IKQ13123 557 aaPredicted RBP18.15■□□□□ 0.5
SNX17-204ENST00000453453 ZYXQ15942 572 aaKnown RBP18.15■□□□□ 0.5
SNX17-204ENST00000453453 CCDC84Q86UT8 332 aaPredicted RBP18.15■□□□□ 0.5
SNX17-204ENST00000453453 PDCL2Q8N4E4 241 aa18.15■□□□□ 0.5
SNX17-204ENST00000453453 FBXO18Q8NFZ0 1043 aa18.15■□□□□ 0.5
SNX17-204ENST00000453453 KIAA1683Q9H0B3 1180 aa18.15■□□□□ 0.5
SNX17-204ENST00000453453 SCG2P13521 617 aa18.14■□□□□ 0.49
SNX17-204ENST00000453453 VGLL4Q14135 290 aa18.14■□□□□ 0.49
SNX17-204ENST00000453453 SAFBQ15424 915 aaKnown RBP eCLIP18.14■□□□□ 0.49
SNX17-204ENST00000453453 PFKFB3Q16875 520 aaPredicted RBP18.14■□□□□ 0.49
SNX17-204ENST00000453453 ANKRD13AQ8IZ07 590 aa18.14■□□□□ 0.49
SNX17-204ENST00000453453 ZNF280CQ8ND82 737 aa18.14■□□□□ 0.49
SNX17-204ENST00000453453 LPAR1Q92633 364 aa18.14■□□□□ 0.49
SNX17-204ENST00000453453 RIOX1Q9H6W3 641 aa18.14■□□□□ 0.49
SNX17-204ENST00000453453 GUCY1B3Q02153 619 aa18.13■□□□□ 0.49
SNX17-204ENST00000453453 MAP3K11Q16584 847 aa18.13■□□□□ 0.49
SNX17-204ENST00000453453 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.13■□□□□ 0.49
SNX17-204ENST00000453453 SPICE1Q8N0Z3 855 aa18.13■□□□□ 0.49
SNX17-204ENST00000453453 AIFM3Q96NN9 605 aa18.13■□□□□ 0.49
SNX17-204ENST00000453453 UBA5Q9GZZ9 404 aa18.13■□□□□ 0.49
SNX17-204ENST00000453453 ZSCAN16Q9H4T2 348 aaPredicted RBP18.13■□□□□ 0.49
SNX17-204ENST00000453453 VAT1LQ9HCJ6 419 aa18.13■□□□□ 0.49
SNX17-204ENST00000453453 ZHX2Q9Y6X8 837 aa18.13■□□□□ 0.49
SNX17-204ENST00000453453 hCG_1642624A0A1W2PR95 340 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 TMEM232C9JQI7 657 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 CYTH3O43739 400 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 GNL2Q13823 731 aaKnown RBP18.12■□□□□ 0.49
SNX17-204ENST00000453453 PKN1Q16512 942 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 KRT40Q6A162 431 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 NUP88Q99567 741 aaPredicted RBP18.12■□□□□ 0.49
SNX17-204ENST00000453453 KCNF1Q9H3M0 494 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 ZNF408Q9H9D4 720 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 SNCAIPQ9Y6H5 919 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 C19orf81C9J6K1 198 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 hCG_1984214I3L0E3 225 aa18.12■□□□□ 0.49
SNX17-204ENST00000453453 WDR46O15213 610 aaKnown RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms