RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 SNRNP48Q6IEG0 339 aaKnown RBP21.29■■□□□ 1
SQSTM1-204ENST00000453046 TICAM2Q86XR7 235 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 GMCL1P1Q8NEA9 526 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 TRPV1Q8NER1 839 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 REPS2Q8NFH8 660 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 FAM227BQ96M60 508 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 FEM1BQ9UK73 627 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 STX8Q9UNK0 236 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 PARP14Q460N5 1801 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 PFASO15067 1338 aa21.29■■□□□ 1
SQSTM1-204ENST00000453046 FOXP2O15409 715 aa21.28■■□□□ 1
SQSTM1-204ENST00000453046 BMP3P12645 472 aa21.28■■□□□ 1
SQSTM1-204ENST00000453046 FXR1P51114 621 aaKnown RBP eCLIP21.28■■□□□ 14e-6■□□□□ 9.8
SQSTM1-204ENST00000453046 CPXCR1Q8N123 301 aa21.28■■□□□ 1
SQSTM1-204ENST00000453046 BACH2Q9BYV9 841 aa21.28■■□□□ 1
SQSTM1-204ENST00000453046 TOMM22Q9NS69 142 aa21.28■■□□□ 1
SQSTM1-204ENST00000453046 ZMYND8Q9ULU4 1186 aaPredicted RBP21.28■■□□□ 1
SQSTM1-204ENST00000453046 TRIOBPQ9H2D6 2365 aa21.28■■□□□ 1
SQSTM1-204ENST00000453046 COL11A1P12107 1806 aaPredicted RBP21.27■■□□□ 1
SQSTM1-204ENST00000453046 A0A0D9SFI3 127 aa21.27■■□□□ 1
SQSTM1-204ENST00000453046 RANBP6O60518 1105 aaKnown RBP21.27■■□□□ 1
SQSTM1-204ENST00000453046 IGHA2P01877 340 aa21.27■■□□□ 1
SQSTM1-204ENST00000453046 COL6A1P12109 1028 aa21.27■■□□□ 1
SQSTM1-204ENST00000453046 IKQ13123 557 aaPredicted RBP21.27■■□□□ 1
SQSTM1-204ENST00000453046 NMIQ13287 307 aaPredicted RBP21.27■■□□□ 1
SQSTM1-204ENST00000453046 SENP6Q9GZR1 1112 aaPredicted RBP21.27■■□□□ 1
SQSTM1-204ENST00000453046 INCENPQ9NQS7 918 aa21.27■■□□□ 1
SQSTM1-204ENST00000453046 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.27■■□□□ 15e-7■■■□□ 16.2
SQSTM1-204ENST00000453046 MYH4Q9Y623 1939 aa21.27■■□□□ 1
SQSTM1-204ENST00000453046 SEPT4O43236 478 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 MYCNP04198 464 aaPredicted RBP21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 ALX1Q15699 326 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 PRAMEF19Q5SWL8 479 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 ANO1Q5XXA6 986 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 ARRDC4Q8NCT1 418 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 CHMP4CQ96CF2 233 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 DDX11Q96FC9 970 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 RAVER2Q9HCJ3 691 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 ANAPC4Q9UJX5 808 aa21.26■□□□□ 0.99
SQSTM1-204ENST00000453046 TMEM232C9JQI7 657 aa21.25■□□□□ 0.99
SQSTM1-204ENST00000453046 FGAP02671 866 aa21.25■□□□□ 0.99
SQSTM1-204ENST00000453046 SYN1P17600 705 aa21.25■□□□□ 0.99
SQSTM1-204ENST00000453046 SLC1A4P43007 532 aa21.25■□□□□ 0.99
SQSTM1-204ENST00000453046 SLC38A10Q9HBR0 1119 aa21.25■□□□□ 0.99
SQSTM1-204ENST00000453046 DIS3Q9Y2L1 958 aaKnown RBP21.25■□□□□ 0.99
SQSTM1-204ENST00000453046 DNM1LO00429 736 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 ATP2A1O14983 1001 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 EIF5BO60841 1220 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 HSPD1P10809 573 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 MCCP23508 829 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 STAT2P52630 851 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 MFAP1P55081 439 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 ZNF792Q3KQV3 632 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 RRP12Q5JTH9 1297 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 GJC2Q5T442 439 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 CASC1Q6TDU7 716 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 CHURC1Q8WUH1 139 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 TINF2Q9BSI4 451 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 RIPK3Q9Y572 518 aa21.24■□□□□ 0.99
SQSTM1-204ENST00000453046 ALPK3Q96L96 1907 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 KBTBD13C9JR72 458 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 NMT2O60551 498 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 FDX1P10109 184 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 LRRC26Q2I0M4 334 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 ZNF589Q86UQ0 364 aaPredicted RBP21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 FAM160B2Q86V87 743 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 GMCL1Q96IK5 515 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 PRO3102Q9H379 93 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 NRBP1Q9UHY1 535 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 CCDC171Q6TFL3 1326 aa21.23■□□□□ 0.99
SQSTM1-204ENST00000453046 ZNFX1Q9P2E3 1918 aaKnown RBP21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 ORC4O43929 436 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 ATN1P54259 1190 aaPredicted RBP21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 OAZ1P54368 228 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 ANKRD35Q8N283 1001 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 STAG1Q8WVM7 1258 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 IL17RBQ9NRM6 502 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 PCDH10Q9P2E7 1040 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 FBXO40Q9UH90 709 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 MTMR7Q9Y216 660 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 CNPY2Q9Y2B0 182 aa21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 RANBP2P49792 3224 aaKnown RBP21.22■□□□□ 0.99
SQSTM1-204ENST00000453046 A0A1W2PPC1 479 aa21.21■□□□□ 0.99
SQSTM1-204ENST00000453046 HAND2P61296 217 aa21.21■□□□□ 0.99
SQSTM1-204ENST00000453046 CHST13Q8NET6 341 aa21.21■□□□□ 0.99
SQSTM1-204ENST00000453046 HOMER2Q9NSB8 354 aa21.21■□□□□ 0.99
SQSTM1-204ENST00000453046 DIAPH3Q9NSV4 1193 aa21.21■□□□□ 0.99
SQSTM1-204ENST00000453046 TACC3Q9Y6A5 838 aa21.21■□□□□ 0.99
SQSTM1-204ENST00000453046 FRMPD3Q5JV73 1810 aa21.2■□□□□ 0.98
SQSTM1-204ENST00000453046 HIP1O00291 1037 aa21.2■□□□□ 0.98
SQSTM1-204ENST00000453046 RARBP10826 455 aa21.2■□□□□ 0.98
SQSTM1-204ENST00000453046 RCSD1Q6JBY9 416 aa21.2■□□□□ 0.98
SQSTM1-204ENST00000453046 KCTD1Q719H9 257 aa21.2■□□□□ 0.98
SQSTM1-204ENST00000453046 ZMYM6O95789 1325 aa21.2■□□□□ 0.98
SQSTM1-204ENST00000453046 FGRP09769 529 aa21.19■□□□□ 0.98
SQSTM1-204ENST00000453046 CCDC96Q2M329 555 aa21.19■□□□□ 0.98
SQSTM1-204ENST00000453046 CWC27Q6UX04 472 aaKnown RBP21.19■□□□□ 0.98
SQSTM1-204ENST00000453046 MFSD6Q6ZSS7 791 aa21.19■□□□□ 0.98
SQSTM1-204ENST00000453046 MSL3Q8N5Y2 521 aaKnown RBP21.19■□□□□ 0.98
SQSTM1-204ENST00000453046 GDF15Q99988 308 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms