RNA–Protein interactions for RNA: ENST00000449575.6

CCDC171-203, Transcript of coiled-coil domain containing 171, humanhuman

TSL 2

Gene CCDC171, Length 2,628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-203ENST00000449575 SNHG28P0DPA3 235 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 BMP3P12645 472 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 PSMA5P28066 241 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 MAP2K1Q02750 393 aaPredicted RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 USP17L24Q0WX57 530 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 SART3Q15020 963 aaKnown RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 SLC35G1Q2M3R5 365 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 ZNF654Q8IZM8 581 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 ATG4CQ96DT6 458 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 CYP46A1Q9Y6A2 500 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 CA12O43570 354 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 HMGB1P09429 215 aaKnown RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 TAL1P17542 331 aaPredicted RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 LIFRP42702 1097 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 NT5C2P49902 561 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 HERVK_113P62684 666 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 IRX3P78415 501 aaPredicted RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 CCDC173Q0VFZ6 552 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 CCDC96Q2M329 555 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 NFXL1Q6ZNB6 911 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 NOL8Q76FK4 1167 aaKnown RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 NBPF11Q86T75 865 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 CMTR1Q8N1G2 835 aaKnown RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 NUP133Q8WUM0 1156 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 ANP32BQ92688 251 aaKnown RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 GMCL1Q96IK5 515 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 UBA5Q9GZZ9 404 aa11.48□□□□□ -0.57
CCDC171-203ENST00000449575 ZNFX1Q9P2E3 1918 aaKnown RBP11.48□□□□□ -0.57
CCDC171-203ENST00000449575 WDR19Q8NEZ3 1342 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 FOXN1O15353 648 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 HSPA1AP0DMV8 641 aaKnown RBP11.47□□□□□ -0.57
CCDC171-203ENST00000449575 HSPA1BP0DMV9 641 aaKnown RBP11.47□□□□□ -0.57
CCDC171-203ENST00000449575 NEK4P51957 841 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 ZNF543Q08ER8 600 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 CCDC178Q5BJE1 867 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 ANKRD13CQ8N6S4 541 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 AGXT2Q9BYV1 514 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 SYNPO2Q9UMS6 1093 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 OFD1O75665 1012 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 Q3C1V9 767 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 OTUD7BQ6GQQ9 843 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 APOA5Q6Q788 366 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 SGMS1Q86VZ5 419 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 MICU3Q86XE3 530 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 REM2Q8IYK8 340 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-203ENST00000449575 SMCR8Q8TEV9 937 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-203ENST00000449575 KIFC2Q96AC6 838 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 PDRG1Q9NUG6 133 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 BTBD7Q9P203 1132 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 RBPJLQ9UBG7 517 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 MAD2L2Q9UI95 211 aa11.47□□□□□ -0.57
CCDC171-203ENST00000449575 KLF18A0A0U1RQI7 1052 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 CCDC69A6NI79 296 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 TLR2O60603 784 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 CNMDO75829 334 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 AK2P54819 239 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 COG2Q14746 738 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 PPP4R3BQ5MIZ7 849 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 MTA3Q9BTC8 594 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 PAGR1Q9BTK6 254 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 SLC45A1Q9Y2W3 748 aa11.46□□□□□ -0.57
CCDC171-203ENST00000449575 CD2BP2O95400 341 aaKnown RBP11.46□□□□□ -0.58
CCDC171-203ENST00000449575 DSG3P32926 999 aa11.46□□□□□ -0.58
CCDC171-203ENST00000449575 RBM10P98175 930 aaKnown RBP11.46□□□□□ -0.58
CCDC171-203ENST00000449575 C17orf99Q6UX52 265 aa11.46□□□□□ -0.58
CCDC171-203ENST00000449575 SMAP1Q8IYB5 467 aaPredicted RBP11.46□□□□□ -0.58
CCDC171-203ENST00000449575 DCAF4Q8WV16 495 aa11.46□□□□□ -0.58
CCDC171-203ENST00000449575 PARK7Q99497 189 aaKnown RBP11.46□□□□□ -0.58
CCDC171-203ENST00000449575 NAP1L2Q9ULW6 460 aaPredicted RBP11.46□□□□□ -0.58
CCDC171-203ENST00000449575 HPS5Q9UPZ3 1129 aa11.46□□□□□ -0.58
CCDC171-203ENST00000449575 SLC12A7Q9Y666 1083 aa11.46□□□□□ -0.58
CCDC171-203ENST00000449575 PPFIA3O75145 1194 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 LARGE1O95461 756 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 ALDH1A1P00352 501 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 OSBPP22059 807 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 CTGFP29279 349 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 STAT2P52630 851 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 IKQ13123 557 aaPredicted RBP11.45□□□□□ -0.58
CCDC171-203ENST00000449575 GRM4Q14833 912 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 CATIPQ7Z7H3 387 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 ZSCAN30Q86W11 494 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 SLF1Q9BQI6 1058 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 BEGAINQ9BUH8 593 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 ZFYVE28Q9HCC9 887 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 ZCCHC17Q9NP64 241 aaKnown RBP11.45□□□□□ -0.58
CCDC171-203ENST00000449575 PPP1R9AQ9ULJ8 1098 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 PRR12Q9ULL5 1215 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 PALM3A6NDB9 673 aaPredicted RBP11.45□□□□□ -0.58
CCDC171-203ENST00000449575 CYTH3O43739 400 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 PLEKHA8P1O95397 391 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 PARP1P09874 1014 aaKnown RBP11.45□□□□□ -0.58
CCDC171-203ENST00000449575 BCRP11274 1271 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 MSNP26038 577 aaKnown RBP11.45□□□□□ -0.58
CCDC171-203ENST00000449575 CDC27P30260 824 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 PABPC4Q13310 644 aaKnown RBP eCLIP11.45□□□□□ -0.58
CCDC171-203ENST00000449575 ARHGAP39Q9C0H5 1083 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 FAM217BQ9NTX9 383 aaPredicted RBP11.45□□□□□ -0.58
CCDC171-203ENST00000449575 PNMA3Q9UL41 463 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 ADAMTS5Q9UNA0 930 aa11.45□□□□□ -0.58
CCDC171-203ENST00000449575 VWA5AO00534 786 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms