RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NMT2O60551 498 aa24.64■■□□□ 1.54
SDC1-205ENST00000447124 FGRP09769 529 aa24.64■■□□□ 1.54
SDC1-205ENST00000447124 ZNF792Q3KQV3 632 aa24.64■■□□□ 1.54
SDC1-205ENST00000447124 RILPL2Q969X0 211 aa24.64■■□□□ 1.54
SDC1-205ENST00000447124 KIFC2Q96AC6 838 aa24.64■■□□□ 1.54
SDC1-205ENST00000447124 OSBPL3Q9H4L5 887 aa24.64■■□□□ 1.54
SDC1-205ENST00000447124 HSPD1P10809 573 aaKnown RBP24.63■■□□□ 1.53
SDC1-205ENST00000447124 ANO1Q5XXA6 986 aa24.63■■□□□ 1.53
SDC1-205ENST00000447124 SNRNP48Q6IEG0 339 aaKnown RBP24.63■■□□□ 1.53
SDC1-205ENST00000447124 CPXCR1Q8N123 301 aa24.63■■□□□ 1.53
SDC1-205ENST00000447124 CHMP4CQ96CF2 233 aa24.63■■□□□ 1.53
SDC1-205ENST00000447124 TEX13BQ9BXU2 312 aa24.63■■□□□ 1.53
SDC1-205ENST00000447124 FEM1BQ9UK73 627 aa24.63■■□□□ 1.53
SDC1-205ENST00000447124 ZMYND8Q9ULU4 1186 aaPredicted RBP24.63■■□□□ 1.53
SDC1-205ENST00000447124 MYH4Q9Y623 1939 aa24.63■■□□□ 1.53
SDC1-205ENST00000447124 ATP2A1O14983 1001 aa24.62■■□□□ 1.53
SDC1-205ENST00000447124 MSCO60682 206 aa24.62■■□□□ 1.53
SDC1-205ENST00000447124 BMP3P12645 472 aa24.62■■□□□ 1.53
SDC1-205ENST00000447124 KCTD2Q14681 263 aa24.62■■□□□ 1.53
SDC1-205ENST00000447124 LRRC26Q2I0M4 334 aa24.62■■□□□ 1.53
SDC1-205ENST00000447124 SLC38A10Q9HBR0 1119 aa24.62■■□□□ 1.53
SDC1-205ENST00000447124 RAVER2Q9HCJ3 691 aaKnown RBP24.62■■□□□ 1.53
SDC1-205ENST00000447124 TSPY2A6NKD2 308 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 SEPT4O43236 478 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 ORC4O43929 436 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 ZBED4O75132 1171 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 SDSP20132 328 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 MCCP23508 829 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 COPB2P35606 906 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 NOVP48745 357 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 PCDH10Q9P2E7 1040 aa24.61■■□□□ 1.53
SDC1-205ENST00000447124 DIS3Q9Y2L1 958 aaKnown RBP24.61■■□□□ 1.53
SDC1-205ENST00000447124 TMEM232C9JQI7 657 aa24.6■■□□□ 1.53
SDC1-205ENST00000447124 RANBP6O60518 1105 aaKnown RBP24.6■■□□□ 1.53
SDC1-205ENST00000447124 TAL1P17542 331 aaPredicted RBP24.6■■□□□ 1.53
SDC1-205ENST00000447124 SLC4A3P48751 1232 aa24.6■■□□□ 1.53
SDC1-205ENST00000447124 TINF2Q9BSI4 451 aa24.6■■□□□ 1.53
SDC1-205ENST00000447124 SENP6Q9GZR1 1112 aaPredicted RBP24.6■■□□□ 1.53
SDC1-205ENST00000447124 SMCHD1A6NHR9 2005 aa24.59■■□□□ 1.53
SDC1-205ENST00000447124 SYN1P17600 705 aa24.59■■□□□ 1.53
SDC1-205ENST00000447124 GJC2Q5T442 439 aaPredicted RBP24.59■■□□□ 1.53
SDC1-205ENST00000447124 GMCL1Q96IK5 515 aa24.59■■□□□ 1.53
SDC1-205ENST00000447124 STX8Q9UNK0 236 aa24.59■■□□□ 1.53
SDC1-205ENST00000447124 RASGRP2Q7LDG7 609 aa24.58■■□□□ 1.53
SDC1-205ENST00000447124 STAG1Q8WVM7 1258 aa24.58■■□□□ 1.53
SDC1-205ENST00000447124 GDF15Q99988 308 aa24.58■■□□□ 1.53
SDC1-205ENST00000447124 CCDC171Q6TFL3 1326 aa24.58■■□□□ 1.52
SDC1-205ENST00000447124 DNAJC25-GNG10A0A024R161 153 aa24.57■■□□□ 1.52
SDC1-205ENST00000447124 SLC1A4P43007 532 aa24.57■■□□□ 1.52
SDC1-205ENST00000447124 HAND2P61296 217 aa24.57■■□□□ 1.52
SDC1-205ENST00000447124 RCSD1Q6JBY9 416 aa24.57■■□□□ 1.52
SDC1-205ENST00000447124 DNM1LO00429 736 aa24.56■■□□□ 1.52
SDC1-205ENST00000447124 ZNF865P0CJ78 1059 aaPredicted RBP24.56■■□□□ 1.52
SDC1-205ENST00000447124 KCTD1Q719H9 257 aa24.56■■□□□ 1.52
SDC1-205ENST00000447124 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.56■■□□□ 1.52
SDC1-205ENST00000447124 CHURC1Q8WUH1 139 aa24.56■■□□□ 1.52
SDC1-205ENST00000447124 DDX11Q96FC9 970 aa24.56■■□□□ 1.52
SDC1-205ENST00000447124 NRBP1Q9UHY1 535 aa24.56■■□□□ 1.52
SDC1-205ENST00000447124 CTDP1Q9Y5B0 961 aaPredicted RBP24.56■■□□□ 1.52
SDC1-205ENST00000447124 PLA2G6O60733 806 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 SNAI1O95863 264 aaPredicted RBP24.55■■□□□ 1.52
SDC1-205ENST00000447124 OAZ1P54368 228 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 RRP12Q5JTH9 1297 aaKnown RBP24.55■■□□□ 1.52
SDC1-205ENST00000447124 PPP4R3BQ5MIZ7 849 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 FAM160B2Q86V87 743 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 ARRDC4Q8NCT1 418 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 FGD4Q96M96 766 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 FRMPD3Q5JV73 1810 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 ZNF536O15090 1300 aa24.55■■□□□ 1.52
SDC1-205ENST00000447124 PDE4AP27815 886 aa24.54■■□□□ 1.52
SDC1-205ENST00000447124 STAT2P52630 851 aa24.54■■□□□ 1.52
SDC1-205ENST00000447124 ATN1P54259 1190 aaPredicted RBP24.54■■□□□ 1.52
SDC1-205ENST00000447124 SNAP25P60880 206 aa24.54■■□□□ 1.52
SDC1-205ENST00000447124 AGBL1Q96MI9 1066 aa24.54■■□□□ 1.52
SDC1-205ENST00000447124 TOMM22Q9NS69 142 aa24.54■■□□□ 1.52
SDC1-205ENST00000447124 TCP11L1Q9NUJ3 509 aa24.54■■□□□ 1.52
SDC1-205ENST00000447124 ISY1Q9ULR0 285 aaKnown RBP24.54■■□□□ 1.52
SDC1-205ENST00000447124 ZMYM6O95789 1325 aa24.54■■□□□ 1.52
SDC1-205ENST00000447124 DNAH12Q6ZR08 3092 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 FDX1P10109 184 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 BMP8BP34820 402 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 IRX6P78412 446 aaPredicted RBP24.53■■□□□ 1.52
SDC1-205ENST00000447124 LRRC41Q15345 812 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 CWC27Q6UX04 472 aaKnown RBP24.53■■□□□ 1.52
SDC1-205ENST00000447124 TBC1D10CQ8IV04 446 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 CHST13Q8NET6 341 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 TMEM47Q9BQJ4 181 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 MTMR7Q9Y216 660 aa24.53■■□□□ 1.52
SDC1-205ENST00000447124 MAGEA10P43363 369 aaPredicted RBP24.52■■□□□ 1.52
SDC1-205ENST00000447124 AKNAD1Q5T1N1 836 aa24.52■■□□□ 1.52
SDC1-205ENST00000447124 TTBK2Q6IQ55 1244 aa24.52■■□□□ 1.52
SDC1-205ENST00000447124 MAMDC4Q6UXC1 1216 aa24.52■■□□□ 1.52
SDC1-205ENST00000447124 PRR12Q9ULL5 1215 aa24.52■■□□□ 1.52
SDC1-205ENST00000447124 MYCNP04198 464 aaPredicted RBP24.51■■□□□ 1.51
SDC1-205ENST00000447124 SLC39A5Q6ZMH5 540 aa24.51■■□□□ 1.51
SDC1-205ENST00000447124 ANKRD35Q8N283 1001 aa24.51■■□□□ 1.51
SDC1-205ENST00000447124 MSL3Q8N5Y2 521 aaKnown RBP24.51■■□□□ 1.51
SDC1-205ENST00000447124 HOMER2Q9NSB8 354 aa24.51■■□□□ 1.51
SDC1-205ENST00000447124 FBXO40Q9UH90 709 aa24.51■■□□□ 1.51
SDC1-205ENST00000447124 PLXNA1Q9UIW2 1896 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms