RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ICA1Q05084 483 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 PLS1Q14651 629 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 C12orf60Q5U649 245 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 FAM109BQ6ICB4 259 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-208ENST00000437607 NCAPG2Q86XI2 1143 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 ARRDC4Q8NCT1 418 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 LBHD1Q9BQE6 289 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-208ENST00000437607 C22orf23Q9BZE7 217 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 LSG1Q9H089 658 aaKnown RBP14.36□□□□□ -0.11
PTPRF-208ENST00000437607 ARHGEF10LQ9HCE6 1279 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 ATP8A2Q9NTI2 1148 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 ADAMTS5Q9UNA0 930 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 USP17L12C9JPN9 530 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 KBTBD13C9JR72 458 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 USP17L21D6R901 530 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 WDR46O15213 610 aaKnown RBP14.35□□□□□ -0.11
PTPRF-208ENST00000437607 EEF2P13639 858 aaKnown RBP14.35□□□□□ -0.11
PTPRF-208ENST00000437607 LRRC41Q15345 812 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 TRIM60Q495X7 471 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 FAM47AQ5JRC9 791 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 C9orf50Q5SZB4 431 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 C16orf86Q6ZW13 317 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 TBC1D32Q96NH3 1257 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 DSCC1Q9BVC3 393 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 TSHZ2Q9NRE2 1034 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 FBXO28Q9NVF7 368 aa14.35□□□□□ -0.11
PTPRF-208ENST00000437607 PGK2P07205 417 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 ADCYAP1R1P41586 468 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 SHHQ15465 462 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 SAMD1Q6SPF0 538 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-208ENST00000437607 SH3RF1Q7Z6J0 888 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 REPS2Q8NFH8 660 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 FERMT2Q96AC1 680 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 CCDC17Q96LX7 622 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 FAM161BQ96MY7 647 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.34□□□□□ -0.11
PTPRF-208ENST00000437607 PDLIM7Q9NR12 457 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 U3KPZ7 1027 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-208ENST00000437607 LCTP09848 1927 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 CHD9Q3L8U1 2897 aa14.34□□□□□ -0.11
PTPRF-208ENST00000437607 MYO9BQ13459 2157 aa14.33□□□□□ -0.11
PTPRF-208ENST00000437607 TRIM43BA6NCK2 446 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 MYCNP04198 464 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-208ENST00000437607 HSPD1P10809 573 aaKnown RBP14.33□□□□□ -0.12
PTPRF-208ENST00000437607 FCER1AP12319 257 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 TAL1P17542 331 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-208ENST00000437607 PTH1RQ03431 593 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 RNF20Q5VTR2 975 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 C1orf53Q5VUE5 145 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 CTR9Q6PD62 1173 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 RIOX2Q8IUF8 465 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 BADQ92934 168 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 TRIM43Q96BQ3 446 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-208ENST00000437607 DDRGK1Q96HY6 314 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 USP26Q9BXU7 913 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 NACAP1Q9BZK3 213 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 SH2D4AQ9H788 454 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 PRDM5Q9NQX1 630 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-208ENST00000437607 SLC5A4Q9NY91 659 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 PRKAG2Q9UGJ0 569 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 ZNF214Q9UL59 606 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-208ENST00000437607 RBM8AQ9Y5S9 174 aaKnown RBP14.33□□□□□ -0.12
PTPRF-208ENST00000437607 SLC4A4Q9Y6R1 1079 aa14.33□□□□□ -0.12
PTPRF-208ENST00000437607 REV3LO60673 3130 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 SLC25A27O95847 323 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 APPP05067 770 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 ITGB8P26012 769 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 TDO2P48775 406 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 ZNF792Q3KQV3 632 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 VPS53Q5VIR6 699 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 STRBPQ96SI9 672 aaKnown RBP14.32□□□□□ -0.12
PTPRF-208ENST00000437607 MMP19Q99542 508 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 NAPBQ9H115 298 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 PPP1R9AQ9ULJ8 1098 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 ZMYM6O95789 1325 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 ROBO3Q96MS0 1386 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 LRRC37A2A6NM11 1700 aa14.32□□□□□ -0.12
PTPRF-208ENST00000437607 VWA5AO00534 786 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 ZNF865P0CJ78 1059 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-208ENST00000437607 RBM25P49756 843 aaKnown RBP14.31□□□□□ -0.12
PTPRF-208ENST00000437607 FAM83BQ5T0W9 1011 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 MAP4K1Q92918 833 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 TINF2Q9BSI4 451 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 COL25A1Q9BXS0 654 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-208ENST00000437607 KANSL2Q9H9L4 492 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 NRBP1Q9UHY1 535 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 CTNNA3Q9UI47 895 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 PHF24Q9UPV7 400 aa14.31□□□□□ -0.12
PTPRF-208ENST00000437607 LAMA4Q16363 1823 aa14.3□□□□□ -0.12
PTPRF-208ENST00000437607 HSPA4P34932 840 aa14.3□□□□□ -0.12
PTPRF-208ENST00000437607 STAT3P40763 770 aa14.3□□□□□ -0.12
PTPRF-208ENST00000437607 TLE2Q04725 743 aa14.3□□□□□ -0.12
PTPRF-208ENST00000437607 LENG1Q96BZ8 264 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-208ENST00000437607 EPB41L4AQ9HCS5 686 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-208ENST00000437607 XPNPEP3Q9NQH7 507 aa14.3□□□□□ -0.12
PTPRF-208ENST00000437607 DIS3Q9Y2L1 958 aaKnown RBP14.3□□□□□ -0.12
PTPRF-208ENST00000437607 ADAMTS4O75173 837 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 PGK1P00558 417 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 RARBP10826 455 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 RASA1P20936 1047 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms