RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ELNP15502 786 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 GRK4P32298 578 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 SLC16A2P36021 539 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 STAT3P40763 770 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 SNAP25P60880 206 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 IFIT1BQ5T764 474 aaKnown RBP21.89■■□□□ 1.09
SHH-203ENST00000435425 RNF20Q5VTR2 975 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 REPS2Q8NFH8 660 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 RAVER2Q9HCJ3 691 aaKnown RBP21.89■■□□□ 1.09
SHH-203ENST00000435425 ERICH2A1L162 156 aa21.88■■□□□ 1.09
SHH-203ENST00000435425 ANKS1AQ92625 1134 aa21.88■■□□□ 1.09
SHH-203ENST00000435425 ZNFX1Q9P2E3 1918 aaKnown RBP21.87■■□□□ 1.09
SHH-203ENST00000435425 GOLGA8HP0CJ92 632 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 PTPREP23469 700 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 IRF5Q13568 498 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 SEC23AQ15436 765 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 SNRNP48Q6IEG0 339 aaKnown RBP21.87■■□□□ 1.09
SHH-203ENST00000435425 MB21D2Q8IYB1 491 aaPredicted RBP21.87■■□□□ 1.09
SHH-203ENST00000435425 SHCBP1Q8NEM2 672 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 SOCS4Q8WXH5 440 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 MROH8Q9H579 483 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 ZNF214Q9UL59 606 aaPredicted RBP21.87■■□□□ 1.09
SHH-203ENST00000435425 PRR12Q9ULL5 1215 aa21.87■■□□□ 1.09
SHH-203ENST00000435425 SLC25A27O95847 323 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 SOX10P56693 466 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 ANTXR2P58335 489 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 ZNF543Q08ER8 600 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 WTAPQ15007 396 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 SART3Q15020 963 aaKnown RBP21.86■■□□□ 1.09
SHH-203ENST00000435425 TMEM67Q5HYA8 995 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 MORN1Q5T089 497 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 CCDC174Q6PII3 467 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 RIOX2Q8IUF8 465 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 SLAIN1Q8ND83 568 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 ARMC5Q96C12 935 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 SLC38A10Q9HBR0 1119 aa21.86■■□□□ 1.09
SHH-203ENST00000435425 SLC15A5A6NIM6 579 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 PRC1O43663 620 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 PLA2G6O60733 806 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 REC8O95072 547 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 RGS2P41220 211 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 ZNF333Q96JL9 665 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 TEX13BQ9BXU2 312 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 SENP2Q9HC62 589 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 RIPK3Q9Y572 518 aa21.85■■□□□ 1.09
SHH-203ENST00000435425 SNHG28P0DPA3 235 aa21.84■■□□□ 1.09
SHH-203ENST00000435425 ZKSCAN1P17029 563 aaPredicted RBP21.84■■□□□ 1.09
SHH-203ENST00000435425 MCM5P33992 734 aa21.84■■□□□ 1.09
SHH-203ENST00000435425 MAP2K5Q13163 448 aa21.84■■□□□ 1.09
SHH-203ENST00000435425 COL9A3Q14050 684 aaPredicted RBP21.84■■□□□ 1.09
SHH-203ENST00000435425 SYDE2Q5VT97 1194 aa21.84■■□□□ 1.09
SHH-203ENST00000435425 RASEFQ8IZ41 740 aa21.84■■□□□ 1.09
SHH-203ENST00000435425 UBA5Q9GZZ9 404 aa21.84■■□□□ 1.09
SHH-203ENST00000435425 CPVLQ9H3G5 476 aa21.84■■□□□ 1.09
SHH-203ENST00000435425 FDX1P10109 184 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 UBXN2AP68543 259 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 GRB14Q14449 540 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 DPP9Q86TI2 863 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 PXYLP1Q8TE99 480 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 USP6NLQ92738 828 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 AGBL1Q96MI9 1066 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 NEK1Q96PY6 1258 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 MMP19Q99542 508 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 GPHNQ9NQX3 736 aaPredicted RBP21.83■■□□□ 1.09
SHH-203ENST00000435425 HOMER2Q9NSB8 354 aa21.83■■□□□ 1.09
SHH-203ENST00000435425 STRNO43815 780 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 INHAP05111 366 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 PARP1P09874 1014 aaKnown RBP21.82■■□□□ 1.08
SHH-203ENST00000435425 FCER1AP12319 257 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 ADORA2AP29274 412 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 MTFR1Q15390 333 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 CCL14Q16627 93 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 ADCK5Q3MIX3 580 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 GPATCH4Q5T3I0 446 aaKnown RBP21.82■■□□□ 1.08
SHH-203ENST00000435425 BTNL9Q6UXG8 535 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 IGDCC4Q8TDY8 1250 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 TRIB2Q92519 343 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 LRRC2Q9BYS8 371 aa21.82■■□□□ 1.08
SHH-203ENST00000435425 ATP2A1O14983 1001 aa21.81■■□□□ 1.08
SHH-203ENST00000435425 COPB2P35606 906 aa21.81■■□□□ 1.08
SHH-203ENST00000435425 OAZ1P54368 228 aa21.81■■□□□ 1.08
SHH-203ENST00000435425 TRIM32Q13049 653 aa21.81■■□□□ 1.08
SHH-203ENST00000435425 NPLOC4Q8TAT6 608 aa21.81■■□□□ 1.08
SHH-203ENST00000435425 APBA2Q99767 749 aa21.81■■□□□ 1.08
SHH-203ENST00000435425 TMEM106CQ9BVX2 250 aa21.81■■□□□ 1.08
SHH-203ENST00000435425 ZNF536O15090 1300 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 PLXNA1Q9UIW2 1896 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 DHX16O60231 1041 aaKnown RBP21.8■■□□□ 1.08
SHH-203ENST00000435425 XRCC5P13010 732 aaKnown RBP21.8■■□□□ 1.08
SHH-203ENST00000435425 ALAS1P13196 640 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 TAL1P17542 331 aaPredicted RBP21.8■■□□□ 1.08
SHH-203ENST00000435425 HSPA4P34932 840 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 KRT32Q14532 448 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 KCTD2Q14681 263 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 ASPRV1Q53RT3 343 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 NFXL1Q6ZNB6 911 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 VAT1LQ9HCJ6 419 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 SMCHD1A6NHR9 2005 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 ZNF236Q9UL36 1845 aa21.8■■□□□ 1.08
SHH-203ENST00000435425 COBLO75128 1261 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms