RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ZHX1Q9UKY1 873 aaPredicted RBP17.3■□□□□ 0.36
SDC1-204ENST00000429035 CNPY2Q9Y2B0 182 aa17.3■□□□□ 0.36
SDC1-204ENST00000429035 TTC41PQ6P2S7 1318 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 ZBED4O75132 1171 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 TSPY3P0CV98 308 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 TSPY8P0CW00 308 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 AKR1A1P14550 325 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 GPR153Q6NV75 609 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 RNF180Q86T96 592 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 IFNL3Q8IZI9 196 aa17.29■□□□□ 0.36
SDC1-204ENST00000429035 OTUD7AQ8TE49 926 aaPredicted RBP17.29■□□□□ 0.36
SDC1-204ENST00000429035 RAVER2Q9HCJ3 691 aaKnown RBP17.29■□□□□ 0.36
SDC1-204ENST00000429035 ZBTB47Q9UFB7 747 aaPredicted RBP17.29■□□□□ 0.36
SDC1-204ENST00000429035 SLC3A2P08195 630 aaKnown RBP17.28■□□□□ 0.36
SDC1-204ENST00000429035 IKQ13123 557 aaPredicted RBP17.28■□□□□ 0.36
SDC1-204ENST00000429035 FAM161BQ96MY7 647 aa17.28■□□□□ 0.36
SDC1-204ENST00000429035 PDLIM7Q9NR12 457 aa17.28■□□□□ 0.36
SDC1-204ENST00000429035 NRBP1Q9UHY1 535 aa17.28■□□□□ 0.36
SDC1-204ENST00000429035 DIS3Q9Y2L1 958 aaKnown RBP17.28■□□□□ 0.36
SDC1-204ENST00000429035 RIPK3Q9Y572 518 aa17.28■□□□□ 0.36
SDC1-204ENST00000429035 IGKV6D-41A0A0C4DH26 115 aa17.27■□□□□ 0.36
SDC1-204ENST00000429035 PATL2C9JE40 543 aaKnown RBP17.27■□□□□ 0.36
SDC1-204ENST00000429035 TTLL1O95922 423 aa17.27■□□□□ 0.36
SDC1-204ENST00000429035 PDE4BQ07343 736 aa17.27■□□□□ 0.36
SDC1-204ENST00000429035 PRPF38AQ8NAV1 312 aaKnown RBP17.27■□□□□ 0.36
SDC1-204ENST00000429035 PI4K2BQ8TCG2 481 aa17.27■□□□□ 0.36
SDC1-204ENST00000429035 BADQ92934 168 aa17.27■□□□□ 0.36
SDC1-204ENST00000429035 HOMER2Q9NSB8 354 aa17.27■□□□□ 0.36
SDC1-204ENST00000429035 PCDHB15Q9Y5E8 787 aa17.27■□□□□ 0.36
SDC1-204ENST00000429035 PQBP1O60828 265 aaKnown RBP17.26■□□□□ 0.35
SDC1-204ENST00000429035 MX1P20591 662 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 PPARAQ07869 468 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 SNX17Q15036 470 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 SLFN13Q68D06 897 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 CCDC129Q6ZRS4 1044 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 SH3RF1Q7Z6J0 888 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 ANKRD35Q8N283 1001 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 MTMR10Q9NXD2 777 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 MTMR4Q9NYA4 1195 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 FEM1BQ9UK73 627 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 PHF24Q9UPV7 400 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 MTMR7Q9Y216 660 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 PLIN4Q96Q06 1357 aa17.26■□□□□ 0.35
SDC1-204ENST00000429035 COL6A3P12111 3177 aa17.25■□□□□ 0.35
SDC1-204ENST00000429035 A0A1W2PQ45 241 aaPredicted RBP17.25■□□□□ 0.35
SDC1-204ENST00000429035 A0A1W2PQY0 241 aa17.25■□□□□ 0.35
SDC1-204ENST00000429035 ZNF865P0CJ78 1059 aaPredicted RBP17.25■□□□□ 0.35
SDC1-204ENST00000429035 TFAP4Q01664 338 aa17.25■□□□□ 0.35
SDC1-204ENST00000429035 STXBP5LQ9Y2K9 1186 aa17.25■□□□□ 0.35
SDC1-204ENST00000429035 SYNGAP1Q96PV0 1343 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 SYNRGQ9UMZ2 1314 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 TSPY2A6NKD2 308 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 CLTBP09497 229 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 BMP3P12645 472 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 TLE2Q04725 743 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 SHHQ15465 462 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 ZMYM1Q5SVZ6 1142 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 C9orf50Q5SZB4 431 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 ZNF697Q5TEC3 545 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 GMCL1P1Q8NEA9 526 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 SLC38A10Q9HBR0 1119 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 STARD7Q9NQZ5 370 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 FAM184BQ9ULE4 1060 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 STX8Q9UNK0 236 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 LRRC37A2A6NM11 1700 aa17.24■□□□□ 0.35
SDC1-204ENST00000429035 TRIM43BA6NCK2 446 aa17.23■□□□□ 0.35
SDC1-204ENST00000429035 TMEM232C9JQI7 657 aa17.23■□□□□ 0.35
SDC1-204ENST00000429035 DLL1O00548 723 aa17.23■□□□□ 0.35
SDC1-204ENST00000429035 STAT2P52630 851 aa17.23■□□□□ 0.35
SDC1-204ENST00000429035 RRP1P56182 461 aaKnown RBP17.23■□□□□ 0.35
SDC1-204ENST00000429035 CTDSPL2Q05D32 466 aa17.23■□□□□ 0.35
SDC1-204ENST00000429035 NEDD1Q8NHV4 660 aa17.23■□□□□ 0.35
SDC1-204ENST00000429035 TRIM43Q96BQ3 446 aaPredicted RBP17.23■□□□□ 0.35
SDC1-204ENST00000429035 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.23■□□□□ 0.35
SDC1-204ENST00000429035 FBXO40Q9UH90 709 aa17.23■□□□□ 0.35
SDC1-204ENST00000429035 ADAMTS4O75173 837 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 SNAI1O95863 264 aaPredicted RBP17.22■□□□□ 0.35
SDC1-204ENST00000429035 RAG1P15918 1043 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 SLC1A4P43007 532 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 ANKRD45Q5TZF3 282 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 MSL3Q8N5Y2 521 aaKnown RBP17.22■□□□□ 0.35
SDC1-204ENST00000429035 CHST13Q8NET6 341 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 MKL1Q969V6 931 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 CRBNQ96SW2 442 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 TOMM22Q9NS69 142 aa17.22■□□□□ 0.35
SDC1-204ENST00000429035 DNAJC25-GNG10A0A024R161 153 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 MYADML2A6NDP7 307 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 ATP2A1O14983 1001 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 C6orf222P0C671 652 aaPredicted RBP17.21■□□□□ 0.35
SDC1-204ENST00000429035 ACLYP53396 1101 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 ACVR2BQ13705 512 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 CCDC96Q2M329 555 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 CCDC174Q6PII3 467 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 ARMCX2Q7L311 632 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 RASGRP2Q7LDG7 609 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 FAM160B2Q86V87 743 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 ACAD9Q9H845 621 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 SPC25Q9HBM1 224 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 RNF146Q9NTX7 359 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 TMEM39AQ9NV64 488 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms