RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 PTPREP23469 700 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 MARCKSP29966 332 aaPredicted RBP10.8□□□□□ -0.68
HMGB4-201ENST00000425537 EPS15P42566 896 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 NDUFA8P51970 172 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 NAPAP54920 295 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 ATP2B2Q01814 1243 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 ZNF543Q08ER8 600 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 SNW1Q13573 536 aaKnown RBP10.8□□□□□ -0.68
HMGB4-201ENST00000425537 CCDC96Q2M329 555 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 SPDYE2Q495Y8 402 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 TTC38Q5R3I4 469 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 ARL6IP4Q66PJ3 421 aaKnown RBP10.8□□□□□ -0.68
HMGB4-201ENST00000425537 TEX2Q8IWB9 1127 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 PRMT6Q96LA8 375 aaPredicted RBP10.8□□□□□ -0.68
HMGB4-201ENST00000425537 CSRNP1Q96S65 589 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 ZMYND12Q9H0C1 365 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 GOLPH3LQ9H4A5 285 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 SH2D4AQ9H788 454 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 MTMR7Q9Y216 660 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 WDR90Q96KV7 1748 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 PNMA6FA0A0J9YX94 578 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 hCG_1642624A0A1W2PR95 340 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 DDTLA6NHG4 134 aaPredicted RBP10.79□□□□□ -0.68
HMGB4-201ENST00000425537 USP17L5A8MUK1 530 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 POTECB2RU33 542 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 UBE2Q2LH0YL09 131 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 STXBP3O00186 592 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 TBC1D12O60347 775 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 CAPN15O75808 1086 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 TXLNAP40222 546 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 TOB1P50616 345 aaPredicted RBP10.79□□□□□ -0.68
HMGB4-201ENST00000425537 TPM4P67936 248 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 ICA1Q05084 483 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 HS1BP3Q53T59 392 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 EAPPQ56P03 285 aaPredicted RBP10.79□□□□□ -0.68
HMGB4-201ENST00000425537 WWC2Q6AWC2 1192 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 DPY19L2Q6NUT2 758 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 USP17L2Q6R6M4 530 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 CKAP2LQ8IYA6 745 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 CEP57L1Q8IYX8 460 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 RNF214Q8ND24 703 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 OXER1Q8TDS5 423 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 PIBF1Q8WXW3 757 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 TNFRSF25Q93038 417 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 HOOK2Q96ED9 719 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 NAP1L4Q99733 375 aaKnown RBP10.79□□□□□ -0.68
HMGB4-201ENST00000425537 PANK2Q9BZ23 570 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.79□□□□□ -0.68
HMGB4-201ENST00000425537 ARHGEF10LQ9HCE6 1279 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 GINM1Q9NU53 330 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 PCDHAC2Q9Y5I4 1007 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 MYH4Q9Y623 1939 aa10.79□□□□□ -0.68
HMGB4-201ENST00000425537 GOLGA6L19H0YKK7 550 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 EGFRP00533 1210 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 GOLGA8HP0CJ92 632 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 ATP2B1P20020 1258 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 CACNB3P54284 484 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 NONOQ15233 471 aaKnown RBP eCLIP10.78□□□□□ -0.68
HMGB4-201ENST00000425537 PIK3AP1Q6ZUJ8 805 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 MICALL2Q8IY33 904 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 LRRC47Q8N1G4 583 aaKnown RBP10.78□□□□□ -0.68
HMGB4-201ENST00000425537 GMCL1P1Q8NEA9 526 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 TRPM4Q8TD43 1214 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 DPF2Q92785 391 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 GMCL1Q96IK5 515 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 FBXO2Q9UK22 296 aaPredicted RBP10.78□□□□□ -0.68
HMGB4-201ENST00000425537 KCNH3Q9ULD8 1083 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 SCAF8Q9UPN6 1271 aaKnown RBP10.78□□□□□ -0.68
HMGB4-201ENST00000425537 HPSEQ9Y251 543 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 PCDHB6Q9Y5E3 794 aa10.78□□□□□ -0.68
HMGB4-201ENST00000425537 SMCO2A6NFE2 343 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 TCP10L2B9ZVM9 353 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 CYTH3O43739 400 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 EEF2P13639 858 aaKnown RBP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 LONP1P36776 959 aaKnown RBP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 SLC1A4P43007 532 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 ZNF165P49910 485 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 ADCY7P51828 1080 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 MRPL12P52815 198 aaKnown RBP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 ATP2C1P98194 919 aaPredicted RBP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 NPY5RQ15761 445 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 TBC1D10BQ4KMP7 808 aaPredicted RBP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 ANO6Q4KMQ2 910 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 SLFN13Q68D06 897 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 SHC4Q6S5L8 630 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 SH3BP5LQ7L8J4 393 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 SAMD7Q7Z3H4 446 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 HOMER1Q86YM7 354 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 ZFPM1Q8IX07 1006 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 GPC2Q8N158 579 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 REXO1Q8N1G1 1221 aaKnown RBP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 CNNM3Q8NE01 707 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 GPKOWQ92917 476 aaPredicted RBP eCLIP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 PIGSQ96S52 555 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 VEZTQ9HBM0 779 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 GOPCQ9HD26 462 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 GPCPD1Q9NPB8 672 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 MYOZ2Q9NPC6 264 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 KIAA1468Q9P260 1216 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 CCDC39Q9UFE4 941 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms