RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 TRIM43BA6NCK2 446 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 ATP2A1O14983 1001 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 ERC2O15083 957 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 SNAI1O95863 264 aaPredicted RBP15.48■□□□□ 0.07
VRK3-203ENST00000424804 ZFYP08048 801 aaPredicted RBP15.48■□□□□ 0.07
VRK3-203ENST00000424804 MX1P20591 662 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 ITGB8P26012 769 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 TRIM60Q495X7 471 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 ZMYM1Q5SVZ6 1142 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 TRIM43Q96BQ3 446 aaPredicted RBP15.48■□□□□ 0.07
VRK3-203ENST00000424804 CEP95Q96GE4 821 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 MKNK2Q9HBH9 465 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 PHF24Q9UPV7 400 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 ATP11BQ9Y2G3 1177 aa15.48■□□□□ 0.07
VRK3-203ENST00000424804 TTC41PQ6P2S7 1318 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 ADAMTS4O75173 837 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 IGHDP01880 384 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 MAMDC4Q6UXC1 1216 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 PRPF38AQ8NAV1 312 aaKnown RBP15.47■□□□□ 0.07
VRK3-203ENST00000424804 NEDD1Q8NHV4 660 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 FERMT2Q96AC1 680 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 LENG1Q96BZ8 264 aaPredicted RBP15.47■□□□□ 0.07
VRK3-203ENST00000424804 LNPKQ9C0E8 428 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 PDLIM7Q9NR12 457 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 PLIN4Q96Q06 1357 aa15.47■□□□□ 0.07
VRK3-203ENST00000424804 KBTBD13C9JR72 458 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 PGK1P00558 417 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 GNAT2P19087 354 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 KCTD2Q14681 263 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 C9orf50Q5SZB4 431 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 SNRNP48Q6IEG0 339 aaKnown RBP15.46■□□□□ 0.07
VRK3-203ENST00000424804 CCSAPQ6IQ19 270 aaPredicted RBP15.46■□□□□ 0.07
VRK3-203ENST00000424804 TEX13BQ9BXU2 312 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 SLC38A10Q9HBR0 1119 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 INCENPQ9NQS7 918 aa15.46■□□□□ 0.07
VRK3-203ENST00000424804 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.46■□□□□ 0.07
VRK3-203ENST00000424804 ADCY6O43306 1168 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 RAD21O60216 631 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 COPB2P35606 906 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 IRX5P78411 483 aaPredicted RBP15.45■□□□□ 0.06
VRK3-203ENST00000424804 TLE2Q04725 743 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 SHHQ15465 462 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 FAM109BQ6ICB4 259 aaPredicted RBP15.45■□□□□ 0.06
VRK3-203ENST00000424804 ZNF444Q8N0Y2 327 aaPredicted RBP15.45■□□□□ 0.06
VRK3-203ENST00000424804 SLC17A8Q8NDX2 589 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 GMCL1P1Q8NEA9 526 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 KLHDC9Q8NEP7 349 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 FSD1Q9BTV5 496 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 KATNBL1Q9H079 304 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 RAVER2Q9HCJ3 691 aaKnown RBP15.45■□□□□ 0.06
VRK3-203ENST00000424804 XPNPEP3Q9NQH7 507 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 SYNPO2Q9UMS6 1093 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 STXBP5LQ9Y2K9 1186 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 UNC80Q8N2C7 3258 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 CDH23Q9H251 3354 aa15.45■□□□□ 0.06
VRK3-203ENST00000424804 NOVP48745 357 aa15.44■□□□□ 0.06
VRK3-203ENST00000424804 TDO2P48775 406 aa15.44■□□□□ 0.06
VRK3-203ENST00000424804 LRRC47Q8N1G4 583 aaKnown RBP15.44■□□□□ 0.06
VRK3-203ENST00000424804 MSL3Q8N5Y2 521 aaKnown RBP15.44■□□□□ 0.06
VRK3-203ENST00000424804 BADQ92934 168 aa15.44■□□□□ 0.06
VRK3-203ENST00000424804 GUCD1Q96NT3 240 aa15.44■□□□□ 0.06
VRK3-203ENST00000424804 ZNF536O15090 1300 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 SYNGAP1Q96PV0 1343 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 CUL9Q8IWT3 2517 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 MYADML2A6NDP7 307 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 TTLL1O95922 423 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 MYCNP04198 464 aaPredicted RBP15.43■□□□□ 0.06
VRK3-203ENST00000424804 APPP05067 770 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 RARBP10826 455 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 AKR1A1P14550 325 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 EPHB4P54760 987 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 TFAP4Q01664 338 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 PPARAQ07869 468 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 CCDC129Q6ZRS4 1044 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 ZNF467Q7Z7K2 595 aaPredicted RBP15.43■□□□□ 0.06
VRK3-203ENST00000424804 SMC5Q8IY18 1101 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 CPXCR1Q8N123 301 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 KIFC2Q96AC6 838 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 LBHD1Q9BQE6 289 aaPredicted RBP15.43■□□□□ 0.06
VRK3-203ENST00000424804 IL17RBQ9NRM6 502 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 FEM1BQ9UK73 627 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 SYNRGQ9UMZ2 1314 aa15.43■□□□□ 0.06
VRK3-203ENST00000424804 EYSQ5T1H1 3165 aa15.42■□□□□ 0.06
VRK3-203ENST00000424804 A0A1W2PQ45 241 aaPredicted RBP15.42■□□□□ 0.06
VRK3-203ENST00000424804 A0A1W2PQY0 241 aa15.42■□□□□ 0.06
VRK3-203ENST00000424804 CTAGE5O15320 804 aa15.42■□□□□ 0.06
VRK3-203ENST00000424804 ZBED4O75132 1171 aa15.42■□□□□ 0.06
VRK3-203ENST00000424804 VPS53Q5VIR6 699 aa15.42■□□□□ 0.06
VRK3-203ENST00000424804 SLFN13Q68D06 897 aa15.42■□□□□ 0.06
VRK3-203ENST00000424804 TSEN34Q9BSV6 310 aaKnown RBP15.42■□□□□ 0.06
VRK3-203ENST00000424804 LCTP09848 1927 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 KIAA0355O15063 1070 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 FGRP09769 529 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 BMP3P12645 472 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 OAZ1P54368 228 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 PDE1AP54750 535 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 LRRFIP1Q32MZ4 808 aaKnown RBP15.41■□□□□ 0.06
VRK3-203ENST00000424804 RASGRP2Q7LDG7 609 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 RNF180Q86T96 592 aa15.41■□□□□ 0.06
VRK3-203ENST00000424804 CHD1LQ86WJ1 897 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms