RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 NBPF11Q86T75 865 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 ANKLE2Q86XL3 938 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 SLITRK4Q8IW52 837 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 DNAJB8Q8NHS0 232 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 GTF2IRD1Q9UHL9 959 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 EFR3BQ9Y2G0 817 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 ERVK-7P63135 1459 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 RPRD2Q5VT52 1461 aaKnown RBP3.62□□□□□ -1.83
VPS13A-208ENST00000423463 SPATA31D1Q6ZQQ2 1576 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 NOS1P29475 1434 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 SETD5Q9C0A6 1442 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 RAG1P15918 1043 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 XP32Q5T750 250 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 WFDC3Q8IUB2 231 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 MFSD4AQ8N468 514 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 ZNF512BQ96KM6 892 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-208ENST00000423463 FERD3LQ96RJ6 166 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 CCSER2Q9H7U1 834 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 GINM1Q9NU53 330 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 BSDC1Q9NW68 430 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-208ENST00000423463 GMIPQ9P107 970 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 MAPK8IP1Q9UQF2 711 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 ROBO2Q9HCK4 1378 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 PREX1Q8TCU6 1659 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 WASH4PA8MWX3 477 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 LRRN2O75325 713 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 ZNF165P49910 485 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 TNK2Q07912 1038 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 AOC3Q16853 763 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 RUFY4Q6ZNE9 571 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 TP53INP2Q8IXH6 220 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 FLCNQ8NFG4 579 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 BCL7CQ8WUZ0 217 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-208ENST00000423463 GPRASP2Q96D09 838 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 UNC13BO14795 1591 aa3.61□□□□□ -1.83
VPS13A-208ENST00000423463 PTPRTO14522 1441 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 PLA2R1Q13018 1463 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 FAM155AB1AL88 458 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 H3BS24 57 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 UBOX5O94941 541 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 WNT11O96014 354 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 GP2P55259 537 aaKnown RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 IFI16Q16666 785 aaKnown RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 NLRC3Q7RTR2 1065 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 ATG4CQ96DT6 458 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 Q96M66 194 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 MPHOSPH9Q99550 1183 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 EHMT1Q9H9B1 1298 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 PRDM7Q9NQW5 492 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 FAM86C1Q9NVL1 165 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 INPP5FQ9Y2H2 1132 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 OAS3Q9Y6K5 1087 aaKnown RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 CAMSAP1Q5T5Y3 1602 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 EFCAB6Q5THR3 1501 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 CEP170BQ9Y4F5 1589 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 ATE1O95260 518 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 CD8BP10966 210 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 ZNF746Q6NUN9 644 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 VSIG10LQ86VR7 867 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 REXO1Q8N1G1 1221 aaKnown RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 HRASLS5Q96KN8 279 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 CCDC74BQ96LY2 380 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 HSPA12BQ96MM6 686 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 TGIF2Q9GZN2 237 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 ATP13A1Q9HD20 1204 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 PAK6Q9NQU5 681 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-208ENST00000423463 ZNRF3Q9ULT6 936 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 EID1Q9Y6B2 187 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 CAPN6Q9Y6Q1 641 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 CEP152O94986 1710 aa3.6□□□□□ -1.83
VPS13A-208ENST00000423463 UGGT1Q9NYU2 1555 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 TET3O43151 1660 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 ZNF865P0CJ78 1059 aaPredicted RBP3.59□□□□□ -1.83
VPS13A-208ENST00000423463 ACRP10323 421 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 GBP1P32455 592 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 GJA8P48165 433 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 ZYXQ15942 572 aaKnown RBP3.59□□□□□ -1.83
VPS13A-208ENST00000423463 ABI1Q8IZP0 508 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 TMEM40Q8WWA1 233 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 CEP131Q9UPN4 1083 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 SLC5A6Q9Y289 635 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 IQGAP3Q86VI3 1631 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 IGF2BP3O00425 579 aaKnown RBP eCLIP3.59□□□□□ -1.83
VPS13A-208ENST00000423463 PRNPP04156 253 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 ETV3P41162 512 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 NASPP49321 788 aaPredicted RBP3.59□□□□□ -1.83
VPS13A-208ENST00000423463 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.59□□□□□ -1.83
VPS13A-208ENST00000423463 KREMEN1Q96MU8 473 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 SLC9A7Q96T83 725 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 TNKS2Q9H2K2 1166 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 CAPN10Q9HC96 672 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 ST14Q9Y5Y6 855 aa3.59□□□□□ -1.83
VPS13A-208ENST00000423463 RAB3GAP2Q9H2M9 1393 aa3.59□□□□□ -1.84
VPS13A-208ENST00000423463 MYO3AQ8NEV4 1616 aa3.59□□□□□ -1.84
VPS13A-208ENST00000423463 GCC2Q8IWJ2 1684 aa3.59□□□□□ -1.84
VPS13A-208ENST00000423463 SHISA3A0PJX4 238 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 LTKP29376 864 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 SNW1Q13573 536 aaKnown RBP3.58□□□□□ -1.84
VPS13A-208ENST00000423463 TDRD10Q5VZ19 366 aaKnown RBP3.58□□□□□ -1.84
VPS13A-208ENST00000423463 DTWD2Q8NBA8 298 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms